BacMap

Definition	Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession	NC_002678
Length	7,036,071

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The map label for this gene is gdhII [H]

Identifier: 13472727

GI number: 13472727

Start: 2502529

End: 2503308

Strand: Direct

Name: gdhII [H]

Synonym: mlr3115

Alternate gene names: 13472727

Gene position: 2502529-2503308 (Clockwise)

Preceding gene: 13472726

Following gene: 13472728

Centisome position: 35.57

GC content: 65.9

Gene sequence:

>780_bases
ATGCAAAAAATGCTCGCACTCGCCAACAAGATCGCCATCGTCACCGGCGCCAGTTCCGGCATCGGCCGCGCCACGGCGAA
ACTCTTCGCCGAGGAAGGGGCCAGGGTCGTCGTCGCCGCCCGCCGTCAGGCCGAACTCGATACGCTTGTCGCCGAGATAT
CGGACGCGGAAGGCACGGCCGTCGCGCTTGCCGGCGACGTCAGGGACGAAGCCTATGCGAAGGCCCTTGTCGATCTGGCG
GTCGAAAGCTTCGGCGGCCTCGACGTCGCCTTCAACAATGCCGGCGCCGTCGGCCAGATGGGGCCGATCTCAGGCCTGTC
ACTGGAGGGATGGCGCGAAACCCTCGACACCAACCTCACCAGTGCGTTTCTCGGCGCGAAATACCAGGTGCCGGCGATGA
TCGAGCGAGGCGGCGGCTCCCTGATCTTCACTTCCACCTTCGTCGGCCACACCATCGGCATGCCAGGCATGACCAGCTAT
GCCGCAAGCAAGGCCGGCCTGATCGGGTTGACGCAGGTGCTGGCCGCAGAACACGGCCCCCAGGGCGTGCGGGTCAACGC
GCTGCTGCCCGGCGGCACTGACACACCTGCAAGCATCACCAACGCGCCGGATGCCGGACCGGAAGTGCTGGCTTTTGTCC
AAGCCCTGCATGCGCTGAAGCGCATGGCGCAGCCGGAGGAGATTGCCCGCTCGGCGCTTTATCTCGCCTCCGATGCCTCG
AGCTTCACAACGGGAACCGCGCTGTTCGCCGATGGCGGCGTCTCGATCAACCGGACGTGA

Upstream 100 bases:

>100_bases
TTCAGGACGACGCGGCCTTCGCAGGTATCGGGTGGTTCCTCGCCGCTCCATCTGCGACCAAGCATCCCGATTGCCGGCGA
GACCGGCGCGAAAAACAGGG

Downstream 100 bases:

>100_bases
AGGTTTTTTGCGGCGAACAGACCGGTTCGCCGCTTTGACGCAGGCAGCCGGTCTTGCTTTTTCCGCGCGATTTGGCGATT
CCGTTCCCTGTCGAAACGGG

Product: short chain dehydrogenase

Products: NA

Alternate protein names: GLCDH-II [H]

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MQKMLALANKIAIVTGASSGIGRATAKLFAEEGARVVVAARRQAELDTLVAEISDAEGTAVALAGDVRDEAYAKALVDLA
VESFGGLDVAFNNAGAVGQMGPISGLSLEGWRETLDTNLTSAFLGAKYQVPAMIERGGGSLIFTSTFVGHTIGMPGMTSY
AASKAGLIGLTQVLAAEHGPQGVRVNALLPGGTDTPASITNAPDAGPEVLAFVQALHALKRMAQPEEIARSALYLASDAS
SFTTGTALFADGGVSINRT

Sequences:

>Translated_259_residues
MQKMLALANKIAIVTGASSGIGRATAKLFAEEGARVVVAARRQAELDTLVAEISDAEGTAVALAGDVRDEAYAKALVDLA
VESFGGLDVAFNNAGAVGQMGPISGLSLEGWRETLDTNLTSAFLGAKYQVPAMIERGGGSLIFTSTFVGHTIGMPGMTSY
AASKAGLIGLTQVLAAEHGPQGVRVNALLPGGTDTPASITNAPDAGPEVLAFVQALHALKRMAQPEEIARSALYLASDAS
SFTTGTALFADGGVSINRT
>Mature_259_residues
MQKMLALANKIAIVTGASSGIGRATAKLFAEEGARVVVAARRQAELDTLVAEISDAEGTAVALAGDVRDEAYAKALVDLA
VESFGGLDVAFNNAGAVGQMGPISGLSLEGWRETLDTNLTSAFLGAKYQVPAMIERGGGSLIFTSTFVGHTIGMPGMTSY
AASKAGLIGLTQVLAAEHGPQGVRVNALLPGGTDTPASITNAPDAGPEVLAFVQALHALKRMAQPEEIARSALYLASDAS
SFTTGTALFADGGVSINRT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=256, Percent_Identity=35.15625, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=31.1284046692607, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI126723191, Length=191, Percent_Identity=36.1256544502618, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI5031737, Length=247, Percent_Identity=31.1740890688259, Blast_Score=107, Evalue=8e-24,
Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=31.3253012048193, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=31.640625, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI126723750, Length=259, Percent_Identity=31.2741312741313, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=32.1428571428571, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=33.6, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=35.2631578947368, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI59889578, Length=233, Percent_Identity=32.618025751073, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI40254992, Length=248, Percent_Identity=31.0483870967742, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI109715829, Length=249, Percent_Identity=26.9076305220884, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI20149619, Length=199, Percent_Identity=28.1407035175879, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI157739938, Length=191, Percent_Identity=29.3193717277487, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4503817, Length=200, Percent_Identity=29.5, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI302344755, Length=110, Percent_Identity=37.2727272727273, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI4504505, Length=246, Percent_Identity=30.0813008130081, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI31542939, Length=197, Percent_Identity=30.9644670050761, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI7706318, Length=190, Percent_Identity=29.4736842105263, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI4503301, Length=246, Percent_Identity=28.0487804878049, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI210032110, Length=209, Percent_Identity=29.1866028708134, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI7657478, Length=226, Percent_Identity=30.5309734513274, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI32455239, Length=196, Percent_Identity=29.5918367346939, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI5031765, Length=196, Percent_Identity=29.5918367346939, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI40254986, Length=206, Percent_Identity=27.6699029126214, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI87082100, Length=260, Percent_Identity=35, Blast_Score=141, Evalue=4e-35,
Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=34.6938775510204, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1787905, Length=251, Percent_Identity=34.6613545816733, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1789378, Length=242, Percent_Identity=34.7107438016529, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI2367175, Length=250, Percent_Identity=34.8, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=29.718875502008, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787526, Length=250, Percent_Identity=30, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1790717, Length=257, Percent_Identity=29.1828793774319, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI87082160, Length=253, Percent_Identity=27.6679841897233, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI2367365, Length=249, Percent_Identity=30.9236947791165, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789208, Length=252, Percent_Identity=27.3809523809524, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1786812, Length=262, Percent_Identity=30.5343511450382, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1787820, Length=181, Percent_Identity=29.2817679558011, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786701, Length=191, Percent_Identity=28.7958115183246, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789057, Length=256, Percent_Identity=26.953125, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=32.9317269076305, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI25147288, Length=252, Percent_Identity=37.3015873015873, Blast_Score=123, Evalue=9e-29,
Organism=Caenorhabditis elegans, GI17555706, Length=261, Percent_Identity=35.632183908046, Blast_Score=123, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=36.078431372549, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=35.6862745098039, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17560676, Length=252, Percent_Identity=31.3492063492063, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17562904, Length=269, Percent_Identity=31.2267657992565, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=28.1954887218045, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=30.0751879699248, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17560220, Length=268, Percent_Identity=32.4626865671642, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=31.4606741573034, Blast_Score=100, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17559104, Length=267, Percent_Identity=31.4606741573034, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=30.8270676691729, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=30.3030303030303, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17531453, Length=267, Percent_Identity=29.9625468164794, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI115534694, Length=256, Percent_Identity=32.8125, Blast_Score=97, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=29.5880149812734, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=31.5789473684211, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17563726, Length=279, Percent_Identity=29.0322580645161, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=29.4339622641509, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=27.7566539923954, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17551412, Length=268, Percent_Identity=28.3582089552239, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17562990, Length=266, Percent_Identity=28.1954887218045, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17568967, Length=195, Percent_Identity=31.2820512820513, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=27.0676691729323, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=30.4347826086957, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17565030, Length=268, Percent_Identity=28.7313432835821, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17536025, Length=262, Percent_Identity=30.5343511450382, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71982365, Length=189, Percent_Identity=30.6878306878307, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17564282, Length=194, Percent_Identity=29.8969072164948, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17508651, Length=249, Percent_Identity=26.1044176706827, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17561272, Length=260, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538182, Length=227, Percent_Identity=26.8722466960352, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI32563809, Length=210, Percent_Identity=24.7619047619048, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17507613, Length=210, Percent_Identity=24.7619047619048, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=250, Percent_Identity=30, Blast_Score=97, Evalue=3e-21,
Organism=Saccharomyces cerevisiae, GI6322861, Length=261, Percent_Identity=27.2030651340996, Blast_Score=88, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6322226, Length=200, Percent_Identity=27, Blast_Score=65, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=199, Percent_Identity=27.6381909547739, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24644339, Length=252, Percent_Identity=34.5238095238095, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI21355319, Length=254, Percent_Identity=30.7086614173228, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI21357041, Length=253, Percent_Identity=33.596837944664, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=34.2629482071713, Blast_Score=116, Evalue=2e-26,
Organism=Drosophila melanogaster, GI28571526, Length=253, Percent_Identity=33.9920948616601, Blast_Score=115, Evalue=2e-26,
Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=35.0597609561753, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24643142, Length=255, Percent_Identity=31.3725490196078, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI18859837, Length=192, Percent_Identity=35.4166666666667, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24644337, Length=255, Percent_Identity=30.9803921568627, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI281364494, Length=242, Percent_Identity=27.6859504132231, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24641232, Length=241, Percent_Identity=30.7053941908714, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI116007236, Length=242, Percent_Identity=27.6859504132231, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI21357673, Length=220, Percent_Identity=29.5454545454545, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI21358495, Length=198, Percent_Identity=26.7676767676768, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI116007238, Length=177, Percent_Identity=29.9435028248588, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI17737361, Length=240, Percent_Identity=27.0833333333333, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24641388, Length=202, Percent_Identity=33.1683168316832, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24663911, Length=205, Percent_Identity=27.8048780487805, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007234, Length=237, Percent_Identity=27.8481012658228, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24648693, Length=191, Percent_Identity=27.7486910994764, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI21355889, Length=191, Percent_Identity=27.7486910994764, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.47 [H]

Molecular weight: Translated: 26393; Mature: 26393

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKMLALANKIAIVTGASSGIGRATAKLFAEEGARVVVAARRQAELDTLVAEISDAEGTA
CCHHHHHHHEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCCCCE
VALAGDVRDEAYAKALVDLAVESFGGLDVAFNNAGAVGQMGPISGLSLEGWRETLDTNLT
EEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
SAFLGAKYQVPAMIERGGGSLIFTSTFVGHTIGMPGMTSYAASKAGLIGLTQVLAAEHGP
HHHHCCCCCCCHHEECCCCCEEEEEHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHCCCC
QGVRVNALLPGGTDTPASITNAPDAGPEVLAFVQALHALKRMAQPEEIARSALYLASDAS
CCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
SFTTGTALFADGGVSINRT
CCCCCEEEEECCCEEECCC
>Mature Secondary Structure
MQKMLALANKIAIVTGASSGIGRATAKLFAEEGARVVVAARRQAELDTLVAEISDAEGTA
CCHHHHHHHEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCCCCE
VALAGDVRDEAYAKALVDLAVESFGGLDVAFNNAGAVGQMGPISGLSLEGWRETLDTNLT
EEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
SAFLGAKYQVPAMIERGGGSLIFTSTFVGHTIGMPGMTSYAASKAGLIGLTQVLAAEHGP
HHHHCCCCCCCHHEECCCCCEEEEEHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHCCCC
QGVRVNALLPGGTDTPASITNAPDAGPEVLAFVQALHALKRMAQPEEIARSALYLASDAS
CCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
SFTTGTALFADGGVSINRT
CCCCCEEEEECCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA