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The map label for this gene is ybdL [C]

Identifier: 13472630

GI number: 13472630

Start: 2398267

End: 2399451

Strand: Direct

Name: ybdL [C]

Synonym: mlr2987

Alternate gene names: 13472630

Gene position: 2398267-2399451 (Clockwise)

Preceding gene: 13472625

Following gene: 13472631

Centisome position: 34.09

GC content: 64.81

Gene sequence:

>1185_bases
ATGCTCCACACGATTTCGGCCTTCGACCGTCTCGGCGAGGAAAACGCGTTCGCGGTGCTCGCGCGGGCGACCGCACTTGC
CCAACAAGGCCGCGACATCGTCAATCTCGGCATCGGCCAGCCCGACTTCAAGACGCCGCAGCACATCGTCGAGGCGGCGA
TCAAGGCGCTGCGCGACGGCCACCACGGCTACACGCCGGCCAACGGCCTGCTGGCAACGCGCGAGGCGGTGGTGCGGCGC
ACGCTGACCACCACCGGCGTCGAGGTCTCGCCCGAAGCGGTGATGATCCTGCCCGGCGGCAAGCCGACCATGTTCGCCGC
GATCCTGATGTTCGGCGAGCCTGGCGCCGAGATCCTCTATCCCGACCCCGGCTTTCCCATCTATCGTTCGATGATCGAAT
TCACCGGTGCCGCGCCGATCCCGGTGCCGATGCGCGAGGAAAACGGCTTTGCCTTTTCCGCAGAAGAAACGCTGGCACTG
ATCACCTCCAAGACCAGGCTCTTGATCCTCAACTCGCCGGCCAACCCGACCGGCGGCGTCACGCCGCGCGCCGAAATCGA
GAAGCTGGTCAAGGGGCTGGAGAAACACCCCGATGTCGCCATCCTCTCCGACGAGATCTACGACGCTATGACCTATGACG
GCGAGACGCACTGCTCGCTGCTCGGCTATCCCGAAATCCGCGACCGGCTGATCGTGCTCAATGGCTGGTCCAAGACCTGG
GCGATGACCGGCTGGCGCATGGGCTGGTCGATCTGGCCGAATGGCGACAGGGGCGCACATCTCTACGACAAGGTGCGCAA
GCTGGCGGTCAATTGCTGGTCCTGCGTCAACGCGCCGAGCCAGTTCGCCGGCATCGCGGCCATCGACGGCCCGCAGGACG
ACGTCGACACCATGATGCGCGCCTTCGACCGCCGCAGGAAGGTCGTCGTCGAAGGGCTGAATGCCTTGCCCAACATTTCC
TGCATCACGCCCAAGGGCGCGTTCTACGCCTTCCCCAATGTCTCGAAAACCGGCTGGAAGGCAAAGAAGCTCGCCTCCGC
ACTGCTCGACGACGCCGGCGTGGCGCTGATCGGCGGCCCCGATTTCGGCATTCTCGGCGAAGGCTATGTCAGGCTCTCCT
ACGCCAACTCCGAGGAGAACATCTTGCGCGCGCTGGAACGGATCGGGGCGTTCCTCTCCAAATAG

Upstream 100 bases:

>100_bases
CTGAGATTTTCCGACACCGAGGACTCCAATCCGTTTGACTTTTGCCAGCCGAAGCTCACAAAAACGCAACCCCACAGTAA
GAACCACACGGACGGGAAAA

Downstream 100 bases:

>100_bases
ACATCGAAGCAGGCCGGAGCCTTTCCGGATAATTAGCGGCCAGCCGCCATGGCGGTGTCATGATCCGTCGGGAGGCTCGC
GGGCAAGACTGTGCCTCCAT

Product: aspartate aminotransferase

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MLHTISAFDRLGEENAFAVLARATALAQQGRDIVNLGIGQPDFKTPQHIVEAAIKALRDGHHGYTPANGLLATREAVVRR
TLTTTGVEVSPEAVMILPGGKPTMFAAILMFGEPGAEILYPDPGFPIYRSMIEFTGAAPIPVPMREENGFAFSAEETLAL
ITSKTRLLILNSPANPTGGVTPRAEIEKLVKGLEKHPDVAILSDEIYDAMTYDGETHCSLLGYPEIRDRLIVLNGWSKTW
AMTGWRMGWSIWPNGDRGAHLYDKVRKLAVNCWSCVNAPSQFAGIAAIDGPQDDVDTMMRAFDRRRKVVVEGLNALPNIS
CITPKGAFYAFPNVSKTGWKAKKLASALLDDAGVALIGGPDFGILGEGYVRLSYANSEENILRALERIGAFLSK

Sequences:

>Translated_394_residues
MLHTISAFDRLGEENAFAVLARATALAQQGRDIVNLGIGQPDFKTPQHIVEAAIKALRDGHHGYTPANGLLATREAVVRR
TLTTTGVEVSPEAVMILPGGKPTMFAAILMFGEPGAEILYPDPGFPIYRSMIEFTGAAPIPVPMREENGFAFSAEETLAL
ITSKTRLLILNSPANPTGGVTPRAEIEKLVKGLEKHPDVAILSDEIYDAMTYDGETHCSLLGYPEIRDRLIVLNGWSKTW
AMTGWRMGWSIWPNGDRGAHLYDKVRKLAVNCWSCVNAPSQFAGIAAIDGPQDDVDTMMRAFDRRRKVVVEGLNALPNIS
CITPKGAFYAFPNVSKTGWKAKKLASALLDDAGVALIGGPDFGILGEGYVRLSYANSEENILRALERIGAFLSK
>Mature_394_residues
MLHTISAFDRLGEENAFAVLARATALAQQGRDIVNLGIGQPDFKTPQHIVEAAIKALRDGHHGYTPANGLLATREAVVRR
TLTTTGVEVSPEAVMILPGGKPTMFAAILMFGEPGAEILYPDPGFPIYRSMIEFTGAAPIPVPMREENGFAFSAEETLAL
ITSKTRLLILNSPANPTGGVTPRAEIEKLVKGLEKHPDVAILSDEIYDAMTYDGETHCSLLGYPEIRDRLIVLNGWSKTW
AMTGWRMGWSIWPNGDRGAHLYDKVRKLAVNCWSCVNAPSQFAGIAAIDGPQDDVDTMMRAFDRRRKVVVEGLNALPNIS
CITPKGAFYAFPNVSKTGWKAKKLASALLDDAGVALIGGPDFGILGEGYVRLSYANSEENILRALERIGAFLSK

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=346, Percent_Identity=27.7456647398844, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI169881279, Length=346, Percent_Identity=27.7456647398844, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI56713254, Length=324, Percent_Identity=25.9259259259259, Blast_Score=121, Evalue=9e-28,
Organism=Homo sapiens, GI56713256, Length=324, Percent_Identity=25.9259259259259, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI169881281, Length=330, Percent_Identity=25.1515151515152, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI4507369, Length=381, Percent_Identity=22.8346456692913, Blast_Score=92, Evalue=7e-19,
Organism=Escherichia coli, GI1786816, Length=374, Percent_Identity=26.2032085561497, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1788722, Length=372, Percent_Identity=29.3010752688172, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1788627, Length=385, Percent_Identity=26.7532467532467, Blast_Score=141, Evalue=9e-35,
Organism=Escherichia coli, GI1787909, Length=351, Percent_Identity=23.3618233618234, Blast_Score=69, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71994476, Length=286, Percent_Identity=25.8741258741259, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17567663, Length=376, Percent_Identity=26.3297872340426, Blast_Score=114, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI71994472, Length=286, Percent_Identity=25.8741258741259, Blast_Score=114, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI17567369, Length=320, Percent_Identity=24.6875, Blast_Score=101, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI71981209, Length=378, Percent_Identity=23.5449735449735, Blast_Score=70, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6322401, Length=393, Percent_Identity=24.6819338422392, Blast_Score=101, Evalue=2e-22,
Organism=Drosophila melanogaster, GI28573069, Length=409, Percent_Identity=24.6943765281174, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24646114, Length=409, Percent_Identity=24.6943765281174, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI28573067, Length=409, Percent_Identity=24.6943765281174, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI28573065, Length=409, Percent_Identity=24.6943765281174, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI18859735, Length=377, Percent_Identity=23.342175066313, Blast_Score=92, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 42782; Mature: 42782

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHTISAFDRLGEENAFAVLARATALAQQGRDIVNLGIGQPDFKTPQHIVEAAIKALRDG
CCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
HHGYTPANGLLATREAVVRRTLTTTGVEVSPEAVMILPGGKPTMFAAILMFGEPGAEILY
CCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCHHHHHEEHHCCCCCCEEEE
PDPGFPIYRSMIEFTGAAPIPVPMREENGFAFSAEETLALITSKTRLLILNSPANPTGGV
CCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCCHHEEEEECCEEEEEEECCCCCCCCC
TPRAEIEKLVKGLEKHPDVAILSDEIYDAMTYDGETHCSLLGYPEIRDRLIVLNGWSKTW
CCHHHHHHHHHHHHHCCCEEEECHHHHHHHCCCCCCCEEEECCHHHCCEEEEEECCCCHH
AMTGWRMGWSIWPNGDRGAHLYDKVRKLAVNCWSCVNAPSQFAGIAAIDGPQDDVDTMMR
EECCEECCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCEEEECCCCHHHHHHHH
AFDRRRKVVVEGLNALPNISCITPKGAFYAFPNVSKTGWKAKKLASALLDDAGVALIGGP
HHHHHHHHHHHHHHCCCCCEEECCCCCEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCC
DFGILGEGYVRLSYANSEENILRALERIGAFLSK
CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLHTISAFDRLGEENAFAVLARATALAQQGRDIVNLGIGQPDFKTPQHIVEAAIKALRDG
CCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
HHGYTPANGLLATREAVVRRTLTTTGVEVSPEAVMILPGGKPTMFAAILMFGEPGAEILY
CCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCHHHHHEEHHCCCCCCEEEE
PDPGFPIYRSMIEFTGAAPIPVPMREENGFAFSAEETLALITSKTRLLILNSPANPTGGV
CCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCCHHEEEEECCEEEEEEECCCCCCCCC
TPRAEIEKLVKGLEKHPDVAILSDEIYDAMTYDGETHCSLLGYPEIRDRLIVLNGWSKTW
CCHHHHHHHHHHHHHCCCEEEECHHHHHHHCCCCCCCEEEECCHHHCCEEEEEECCCCHH
AMTGWRMGWSIWPNGDRGAHLYDKVRKLAVNCWSCVNAPSQFAGIAAIDGPQDDVDTMMR
EECCEECCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCEEEECCCCHHHHHHHH
AFDRRRKVVVEGLNALPNISCITPKGAFYAFPNVSKTGWKAKKLASALLDDAGVALIGGP
HHHHHHHHHHHHHHCCCCCEEECCCCCEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCC
DFGILGEGYVRLSYANSEENILRALERIGAFLSK
CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1990006; 2155199 [H]