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The map label for this gene is yjfH [C]

Identifier: 13472492

GI number: 13472492

Start: 2252146

End: 2252943

Strand: Direct

Name: yjfH [C]

Synonym: mlr2808

Alternate gene names: 13472492

Gene position: 2252146-2252943 (Clockwise)

Preceding gene: 13472491

Following gene: 13472495

Centisome position: 32.01

GC content: 64.54

Gene sequence:

>798_bases
ATGGACCCAATCCGCATCGACGATCCACGGGATTCACGCGTCGCCGCCTATCTCGATATCCGCGAACGCGATCTCGCCGG
CCGGCAAGGCCGTTTCGTCGCCGAAGGCAAGGTGGTCCTCGATCTGCTTCTGTCGTCCGGCCGCTTCGGCGCCGAATCCG
TTCTTGTCCTGGAAAACCGGCTCGGCGGCCTGGAGGACATCCTGCACAAGGCGCCGGCGGACCTGCCGGTCTATGTCGTC
ACCAGCGCGGTGATGGATGCGATCGCCGGCTTCCATATGCATCGCGGCATCCTGGCCATCGGCCGCAAGGCGACGCCGCA
AGCGCCCGGGCCGTTGCTGGATGCCTTGCCCGACCAGGCATTGGTGCTGGTGCTCGTCGGCATCGCCAACCACGACAATA
TGGGCTCGATCTTCCGCAATGCCGCCGCCTTCGGCGCCGATGCGGTGCTGATGGATACGACATGCTGCGATCCGCTGTAC
CGCAAGGCGATCCGCGTTTCCGTCGGCGCCGCGCTCAAGATCCCGTTTGCGTCCTTCACCGACACATCAGGCTTTACCGC
GATGCTCGCCGAACGGGGTTTTGAACAACTTGCCCTATCGCCGCGCGGACGAACCGACATACGCGATGCAAAGCCGGCCG
AGCGCCTGGCGCTCTATCTCGGCACCGAGGGCGAAGGCCTGCCCGAACGCCTGCTTGCGCGCCTGCAAACCGTGCGGATC
ACCATGTCGAAAGGCTTCGACAGCCTGAACGTCGCGGCAGCGTCAGCCATTGCCCTGCATCACTTCTCGCATCGTTGA

Upstream 100 bases:

>100_bases
GACGCTCCTGCGGCCGCTTACCTCGCTGACGATTTTCGGAACGTGGCTTGTGCGTCTCTCCCGACGCACGGCCCACGCTC
TCGATATTTGAGCGCAGGAC

Downstream 100 bases:

>100_bases
GCAAGGGCGACGGCGGCACCGCCGCTTCAGTTCGCGTCAGCCTTCTGCAAGGCCCGCACACGGTCGGCGAGGCTGCGATC
GCCGCTGTTGGATCGGCTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MDPIRIDDPRDSRVAAYLDIRERDLAGRQGRFVAEGKVVLDLLLSSGRFGAESVLVLENRLGGLEDILHKAPADLPVYVV
TSAVMDAIAGFHMHRGILAIGRKATPQAPGPLLDALPDQALVLVLVGIANHDNMGSIFRNAAAFGADAVLMDTTCCDPLY
RKAIRVSVGAALKIPFASFTDTSGFTAMLAERGFEQLALSPRGRTDIRDAKPAERLALYLGTEGEGLPERLLARLQTVRI
TMSKGFDSLNVAAASAIALHHFSHR

Sequences:

>Translated_265_residues
MDPIRIDDPRDSRVAAYLDIRERDLAGRQGRFVAEGKVVLDLLLSSGRFGAESVLVLENRLGGLEDILHKAPADLPVYVV
TSAVMDAIAGFHMHRGILAIGRKATPQAPGPLLDALPDQALVLVLVGIANHDNMGSIFRNAAAFGADAVLMDTTCCDPLY
RKAIRVSVGAALKIPFASFTDTSGFTAMLAERGFEQLALSPRGRTDIRDAKPAERLALYLGTEGEGLPERLLARLQTVRI
TMSKGFDSLNVAAASAIALHHFSHR
>Mature_265_residues
MDPIRIDDPRDSRVAAYLDIRERDLAGRQGRFVAEGKVVLDLLLSSGRFGAESVLVLENRLGGLEDILHKAPADLPVYVV
TSAVMDAIAGFHMHRGILAIGRKATPQAPGPLLDALPDQALVLVLVGIANHDNMGSIFRNAAAFGADAVLMDTTCCDPLY
RKAIRVSVGAALKIPFASFTDTSGFTAMLAERGFEQLALSPRGRTDIRDAKPAERLALYLGTEGEGLPERLLARLQTVRI
TMSKGFDSLNVAAASAIALHHFSHR

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=254, Percent_Identity=26.7716535433071, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1790623, Length=173, Percent_Identity=31.2138728323699, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28492; Mature: 28492

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPIRIDDPRDSRVAAYLDIRERDLAGRQGRFVAEGKVVLDLLLSSGRFGAESVLVLENR
CCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCEEECCHHHHHHHHHCCCCCCCEEEEEHHH
LGGLEDILHKAPADLPVYVVTSAVMDAIAGFHMHRGILAIGRKATPQAPGPLLDALPDQA
CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHCCCCE
LVLVLVGIANHDNMGSIFRNAAAFGADAVLMDTTCCDPLYRKAIRVSVGAALKIPFASFT
EEHHEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEECCCCCCC
DTSGFTAMLAERGFEQLALSPRGRTDIRDAKPAERLALYLGTEGEGLPERLLARLQTVRI
CCCCHHHHHHHCCHHHHCCCCCCCCCCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHHEE
TMSKGFDSLNVAAASAIALHHFSHR
EHHCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDPIRIDDPRDSRVAAYLDIRERDLAGRQGRFVAEGKVVLDLLLSSGRFGAESVLVLENR
CCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCEEECCHHHHHHHHHCCCCCCCEEEEEHHH
LGGLEDILHKAPADLPVYVVTSAVMDAIAGFHMHRGILAIGRKATPQAPGPLLDALPDQA
CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHCCCCE
LVLVLVGIANHDNMGSIFRNAAAFGADAVLMDTTCCDPLYRKAIRVSVGAALKIPFASFT
EEHHEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEECCCCCCC
DTSGFTAMLAERGFEQLALSPRGRTDIRDAKPAERLALYLGTEGEGLPERLLARLQTVRI
CCCCHHHHHHHCCHHHHCCCCCCCCCCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHHEE
TMSKGFDSLNVAAASAIALHHFSHR
EHHCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]