Click here to switch to the map view.

The map label for this gene is nolR [H]

Identifier: 13472491

GI number: 13472491

Start: 2251674

End: 2252042

Strand: Direct

Name: nolR [H]

Synonym: mlr2806

Alternate gene names: 13472491

Gene position: 2251674-2252042 (Clockwise)

Preceding gene: 13472490

Following gene: 13472492

Centisome position: 32.0

GC content: 57.45

Gene sequence:

>369_bases
ATGAGCAAAAAGCATGGGGCATTCATGGTCTCGACAAAGCTAATCGCCAACGCCGAATCTGCTGCCGAATTTTTGATGCT
CATGGGCAACGAAAAGCGGCTGTTGATTATGAGCTATCTGATCGACGGTGAAATGTCGGTCGGCGCCATCGCCGACAAGG
TGATGCTCAGCCAATCCGCGCTCTCGCAGCATCTGGCCAAGCTGCGGGCGCTTGACCTCGTGGAAACCCGCCGCGACCGT
CAGATGATCTATTACTCCTGCAAATCCGACGCGGTGCGCGAGCTGCTTGTCGTGCTGGATGGTATTTTCGGCACCGGCAA
GGAGGACCTGTCCCAGATGGCGCAGAGATTGCGCCGCGCCGGGACTTGA

Upstream 100 bases:

>100_bases
TAAAAGAAATGTTCTACCCTTCGGTGATGGCGCTGACTCGTCGGTGGCCATTCGCAAGTGAATTTATGGATTCAGGCACC
ATTGCCCCCATGGCGCCTCG

Downstream 100 bases:

>100_bases
CCGGACGCTCCTGCGGCCGCTTACCTCGCTGACGATTTTCGGAACGTGGCTTGTGCGTCTCTCCCGACGCACGGCCCACG
CTCTCGATATTTGAGCGCAG

Product: transcriptional regulator, nolR protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MSKKHGAFMVSTKLIANAESAAEFLMLMGNEKRLLIMSYLIDGEMSVGAIADKVMLSQSALSQHLAKLRALDLVETRRDR
QMIYYSCKSDAVRELLVVLDGIFGTGKEDLSQMAQRLRRAGT

Sequences:

>Translated_122_residues
MSKKHGAFMVSTKLIANAESAAEFLMLMGNEKRLLIMSYLIDGEMSVGAIADKVMLSQSALSQHLAKLRALDLVETRRDR
QMIYYSCKSDAVRELLVVLDGIFGTGKEDLSQMAQRLRRAGT
>Mature_121_residues
SKKHGAFMVSTKLIANAESAAEFLMLMGNEKRLLIMSYLIDGEMSVGAIADKVMLSQSALSQHLAKLRALDLVETRRDRQ
MIYYSCKSDAVRELLVVLDGIFGTGKEDLSQMAQRLRRAGT

Specific function: Negative transacting factor controlling the nod regulon. May control the expression of nodD1, nodD2, nodD3 and nodABC genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789021, Length=92, Percent_Identity=40.2173913043478, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 13556; Mature: 13425

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
7.4 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
6.6 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKHGAFMVSTKLIANAESAAEFLMLMGNEKRLLIMSYLIDGEMSVGAIADKVMLSQSA
CCCCCCCEEEHHHHHHCHHHHHHHHHHCCCCCCEEHHEEHHCCCCCHHHHHHHHHHHHHH
LSQHLAKLRALDLVETRRDRQMIYYSCKSDAVRELLVVLDGIFGTGKEDLSQMAQRLRRA
HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
GT
CC
>Mature Secondary Structure 
SKKHGAFMVSTKLIANAESAAEFLMLMGNEKRLLIMSYLIDGEMSVGAIADKVMLSQSA
CCCCCCEEEHHHHHHCHHHHHHHHHHCCCCCCEEHHEEHHCCCCCHHHHHHHHHHHHHH
LSQHLAKLRALDLVETRRDRQMIYYSCKSDAVRELLVVLDGIFGTGKEDLSQMAQRLRRA
HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
GT
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1840615 [H]