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The map label for this gene is rbn [C]

Identifier: 13472171

GI number: 13472171

Start: 1929726

End: 1930745

Strand: Reverse

Name: rbn [C]

Synonym: mll2378

Alternate gene names: 13472171

Gene position: 1930745-1929726 (Counterclockwise)

Preceding gene: 13472175

Following gene: 13472168

Centisome position: 27.44

GC content: 56.18

Gene sequence:

>1020_bases
ATGCGACCCTCGATCAGAGATGTGTGGGGTTTGGTGAGGGAAAGCATAGTCGGCTTCATCAACGACAATGCTCTCAGTCA
TGGGGCCGCGATGGCTTTTTACGCCACCACCTCCTTGGCTCCGATTTTGTTGATTGTGGTCGCTATTGCAGGTCTCGTTT
TCGGTCATGATGCCGCGGAATTGGCATTATCGGCCCAGATTTCAGGGCTGATGGGACCAGAAAGTGCAGATTTGCTCAAG
ACCGCTCTTCAGAGCGCATCAAGCAGATTGTCCGGAACCTGGGCCGCTGCGATCGGGATCGTCACGTTGCTGGTGGCTGC
ATCGGGCGTCTTTGGCGAAATGCAGCAATCGCTGAACATGATCTGGAAGGTTGAACCTCAGGGCAGTTCGTTGTCGCGTC
TGGTCCGGGCTCGTGTGGCAAGTCTGGGTTTGGTCGCAGCGCTCGGTTTCCTACTCCTCGTGTCTCTGGTTGCGAGCGCA
GCGATCTCCGCGCTGGGAAACACCATCAACGCCCATCTGCCGTTTGGCACAATCGTTCTCGGCATGATCAACGCTGTCGT
CTCGTTCGCGCTGATCTCCGTCATGTTCGCCGCAATCTACAAAGTCTTGCCTGATCGGACCCTTGCATGGGGGGATGTCG
GGCTTGGTGCTGTTCTGACCGCACTGCTGTTCACCCTGGGGAAATCGCTTATCGGCTGGTATATCGGCACCAGCGCGGTC
GCCTCCTCATATGGAGCTGCCGGTGGACTGCTCGTCATCCTACTTTGGGTCTACTATACATCCGAAATTTTTCTCCTTGG
CGCCGAATTCACTCGCGCATATTCCATTCGACACGGCAGCAGGTCGGATCTGGAAGCACTGGCTCAAAATCCTTTACCCG
CAAAACATTTGCCGTTTGGCAGAGAGCAAAATTCCTCCTTCGCGGGCGTGATCACGCTGTTGGCGGTGGCGTGCGCGAGC
GCAACGATGACCGCTCTTGTATTCGGTCTTCGACGTCCCCAAGCCGATAAGGACAGCTGA

Upstream 100 bases:

>100_bases
CCCGAAGCACCGGTCCCGAATCCATGTGAGCGGACCGATCGGAACATTGGGGGGGCCGGCGCATTCCTAGGGCGCCACTG
CAAAAAGCTTACGGACGCAA

Downstream 100 bases:

>100_bases
TGCCGGCCGGTCTGGCGCAGAACTCCACGTGTTTGACGAGCCGTCGAGGGTGTCGGGGACCATTTGACGGAAATGGTCCT
CTGGATATCGATTTCGGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MRPSIRDVWGLVRESIVGFINDNALSHGAAMAFYATTSLAPILLIVVAIAGLVFGHDAAELALSAQISGLMGPESADLLK
TALQSASSRLSGTWAAAIGIVTLLVAASGVFGEMQQSLNMIWKVEPQGSSLSRLVRARVASLGLVAALGFLLLVSLVASA
AISALGNTINAHLPFGTIVLGMINAVVSFALISVMFAAIYKVLPDRTLAWGDVGLGAVLTALLFTLGKSLIGWYIGTSAV
ASSYGAAGGLLVILLWVYYTSEIFLLGAEFTRAYSIRHGSRSDLEALAQNPLPAKHLPFGREQNSSFAGVITLLAVACAS
ATMTALVFGLRRPQADKDS

Sequences:

>Translated_339_residues
MRPSIRDVWGLVRESIVGFINDNALSHGAAMAFYATTSLAPILLIVVAIAGLVFGHDAAELALSAQISGLMGPESADLLK
TALQSASSRLSGTWAAAIGIVTLLVAASGVFGEMQQSLNMIWKVEPQGSSLSRLVRARVASLGLVAALGFLLLVSLVASA
AISALGNTINAHLPFGTIVLGMINAVVSFALISVMFAAIYKVLPDRTLAWGDVGLGAVLTALLFTLGKSLIGWYIGTSAV
ASSYGAAGGLLVILLWVYYTSEIFLLGAEFTRAYSIRHGSRSDLEALAQNPLPAKHLPFGREQNSSFAGVITLLAVACAS
ATMTALVFGLRRPQADKDS
>Mature_339_residues
MRPSIRDVWGLVRESIVGFINDNALSHGAAMAFYATTSLAPILLIVVAIAGLVFGHDAAELALSAQISGLMGPESADLLK
TALQSASSRLSGTWAAAIGIVTLLVAASGVFGEMQQSLNMIWKVEPQGSSLSRLVRARVASLGLVAALGFLLLVSLVASA
AISALGNTINAHLPFGTIVLGMINAVVSFALISVMFAAIYKVLPDRTLAWGDVGLGAVLTALLFTLGKSLIGWYIGTSAV
ASSYGAAGGLLVILLWVYYTSEIFLLGAEFTRAYSIRHGSRSDLEALAQNPLPAKHLPFGREQNSSFAGVITLLAVACAS
ATMTALVFGLRRPQADKDS

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 35319; Mature: 35319

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPSIRDVWGLVRESIVGFINDNALSHGAAMAFYATTSLAPILLIVVAIAGLVFGHDAAE
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LALSAQISGLMGPESADLLKTALQSASSRLSGTWAAAIGIVTLLVAASGVFGEMQQSLNM
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
IWKVEPQGSSLSRLVRARVASLGLVAALGFLLLVSLVASAAISALGNTINAHLPFGTIVL
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
GMINAVVSFALISVMFAAIYKVLPDRTLAWGDVGLGAVLTALLFTLGKSLIGWYIGTSAV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ASSYGAAGGLLVILLWVYYTSEIFLLGAEFTRAYSIRHGSRSDLEALAQNPLPAKHLPFG
HHHCCCHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCC
REQNSSFAGVITLLAVACASATMTALVFGLRRPQADKDS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRPSIRDVWGLVRESIVGFINDNALSHGAAMAFYATTSLAPILLIVVAIAGLVFGHDAAE
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LALSAQISGLMGPESADLLKTALQSASSRLSGTWAAAIGIVTLLVAASGVFGEMQQSLNM
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
IWKVEPQGSSLSRLVRARVASLGLVAALGFLLLVSLVASAAISALGNTINAHLPFGTIVL
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
GMINAVVSFALISVMFAAIYKVLPDRTLAWGDVGLGAVLTALLFTLGKSLIGWYIGTSAV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ASSYGAAGGLLVILLWVYYTSEIFLLGAEFTRAYSIRHGSRSDLEALAQNPLPAKHLPFG
HHHCCCHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCC
REQNSSFAGVITLLAVACASATMTALVFGLRRPQADKDS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]