Click here to switch to the map view.

The map label for this gene is 13472138

Identifier: 13472138

GI number: 13472138

Start: 1886602

End: 1887138

Strand: Direct

Name: 13472138

Synonym: mlr2337

Alternate gene names: NA

Gene position: 1886602-1887138 (Clockwise)

Preceding gene: 13472137

Following gene: 13472139

Centisome position: 26.81

GC content: 61.08

Gene sequence:

>537_bases
ATGCCAGCAGAGAGCAAAGCCAAGGTCATCGAAAGAAACCGCGCCCCGCGCGTGCAGATCGCCTACGACGTCGAAACCTA
CGGCAGCCCCACGACGATCGAGTTGCCGTTCGTCATGGCTGTCATGGCCGACCTTTCCGGCGCCTCGCAGACCAAGGAAG
CGTCGAAGTCGGTTCTGGACCGCAATTTCGTCGAAACCGACGCCAATCGCTTCCCCAAATTCATGGAAGCGATGGGACCA
CGCGTGAAGGCGCGCGTGAAGAACACGTTGCCGCAAGCCGAAGGCGCCGAGCGGGACGAGGAACTGGCGATCGATCTCAC
CTTTTCCAAAATGGGCGATTTCGCGCCCGACAAGGTCGCCGAGCAGGTGCCGCAACTGGCCGAGATCCTCAAGATGCGGC
GTCAGCTTGAGGAACTGCTGGGCTTCATGGATGGCCGGGTCGACGCCGAAAAGCGCATCGCGCAGCTTCTGAACAACGAG
CCGCTGCTGAGCAAGATCGCCAGCCAGGCGATTTCTGACGGCAAGGGCGAGGAGTAA

Upstream 100 bases:

>100_bases
TGATGGAAGATCTCGCCCCGTCGGGGCTGAAGGAATTCCGGCTGCTTGCCGGTGTCGCCGATCCCAAGAAGCCGGCCCAG
AAGGATGAAAGGTAACCAGC

Downstream 100 bases:

>100_bases
GTCATGGCCGAACAGCAAAAGACCGCAGCCGCTACCGCCGAGGCCGAAGCCATCGATCTTGGCGAGTTCAGCGGCCTCCT
TGAAAAGGATTTCAAGGTCA

Product: hypothetical protein

Products: NA

Alternate protein names: T6ss S; Type VI Secretion Protein Family; Conserved Protein; Cytoplasmic Protein SciH; Cytoplasmic Protein; Type VI Secretion System Protein; Protein ImpB; Type VI Secretion; Type VI Secretion System Core Protein

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MPAESKAKVIERNRAPRVQIAYDVETYGSPTTIELPFVMAVMADLSGASQTKEASKSVLDRNFVETDANRFPKFMEAMGP
RVKARVKNTLPQAEGAERDEELAIDLTFSKMGDFAPDKVAEQVPQLAEILKMRRQLEELLGFMDGRVDAEKRIAQLLNNE
PLLSKIASQAISDGKGEE

Sequences:

>Translated_178_residues
MPAESKAKVIERNRAPRVQIAYDVETYGSPTTIELPFVMAVMADLSGASQTKEASKSVLDRNFVETDANRFPKFMEAMGP
RVKARVKNTLPQAEGAERDEELAIDLTFSKMGDFAPDKVAEQVPQLAEILKMRRQLEELLGFMDGRVDAEKRIAQLLNNE
PLLSKIASQAISDGKGEE
>Mature_177_residues
PAESKAKVIERNRAPRVQIAYDVETYGSPTTIELPFVMAVMADLSGASQTKEASKSVLDRNFVETDANRFPKFMEAMGPR
VKARVKNTLPQAEGAERDEELAIDLTFSKMGDFAPDKVAEQVPQLAEILKMRRQLEELLGFMDGRVDAEKRIAQLLNNEP
LLSKIASQAISDGKGEE

Specific function: Unknown

COG id: COG3516

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19742; Mature: 19611

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAESKAKVIERNRAPRVQIAYDVETYGSPTTIELPFVMAVMADLSGASQTKEASKSVLD
CCCCHHHHHHHHCCCCCEEEEEEHHCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHH
RNFVETDANRFPKFMEAMGPRVKARVKNTLPQAEGAERDEELAIDLTFSKMGDFAPDKVA
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHCCCCHHHHH
EQVPQLAEILKMRRQLEELLGFMDGRVDAEKRIAQLLNNEPLLSKIASQAISDGKGEE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PAESKAKVIERNRAPRVQIAYDVETYGSPTTIELPFVMAVMADLSGASQTKEASKSVLD
CCCHHHHHHHHCCCCCEEEEEEHHCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHH
RNFVETDANRFPKFMEAMGPRVKARVKNTLPQAEGAERDEELAIDLTFSKMGDFAPDKVA
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHCCCCHHHHH
EQVPQLAEILKMRRQLEELLGFMDGRVDAEKRIAQLLNNEPLLSKIASQAISDGKGEE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA