Click here to switch to the map view.

The map label for this gene is ddpC [H]

Identifier: 13472090

GI number: 13472090

Start: 1831963

End: 1832844

Strand: Reverse

Name: ddpC [H]

Synonym: mll2274

Alternate gene names: 13472090

Gene position: 1832844-1831963 (Counterclockwise)

Preceding gene: 13472091

Following gene: 13472089

Centisome position: 26.05

GC content: 66.55

Gene sequence:

>882_bases
ATGACCGAACTCGCCCAGTCCCCCATGCGCAGTGAAATCCGGCTCTCCTGGATCGGCCGGCTGCGCGGTCTTTTGCCCGA
TGTGGCGCCGTCGACCGTAGTCGGTTCGGCGGTGCTTCTGTTCTGGGTTGCCTGCGCGGTGTTCGGTGCGCAATTCGTGC
CGTTCGATCCGTATGCCGAGGATTTCCTGTCGATGATGACGCCGCCCGACGCGGTACACTGGTTCGGCACCGACCAGCTC
GGCCGCGACGTGCTTTCGCGCATCGTCGTCGGCTCGCGCGATATCCTCCTGGTGGCGCCGCTGGCGACGCTGGCGGGTGT
CACCGCCGGCAGCGTCATCGGCCTGGTGCTCGGCACCTTCGGCGGCCTGGTCGATGCGGTCGGCGCGCGGCTGCTCGATG
CCGTCATGTCGCTGCCCTTCATCGTGCTGGTGACCATGGCGCTGGTGGCGATCGGTCCGTCTAACCTCACCGTCATCGCG
GTCATCGGCCTTGCCTATGCGCCGCTGGTGGCGCGCACGGTGCGCACCGCCGCGCGCGAACAGCGCGAGCGCGACTATGT
CAGCGCCGCCCGTCTCGCCGGCGAGGGACGGCTGGCGATCATGTTTCTCGAAATCCTGCCCAATGTCCGGGAAACCATCC
TGATCGAATTGATCACCCGGCTCGGCTACGCCTTCTTCTCGATCGCGACGCTGAGCTTCCTCGGCCTCGGCATCCAGCCG
CCATCGGCCGACTGGGGGCTGGCGATCGCCGACGGCTACGGCTTCCTCACCGGCGGCAAATGGTGGGTGGTGGTGTTCAA
TTCGGCCGCGATCATCTCGCTGGTCATGGCCACCAACCTCATCGCGCAAGGCATCGGTGCCTTCGAGAACGGCGACAAGT
AG

Upstream 100 bases:

>100_bases
CCGGCGTGCTGGTGATGGCTGCGATTTTCGTGTCGACGGCCGCGATCGGCGATCTCCTGCAGGCGCTGCTCGACCCGCGC
CAGCGCCGGAGCAACGCCCC

Downstream 100 bases:

>100_bases
GCGGTCGTCGAACAGGCTGATCGGCGCGGGGCTGACTCTTTTCCCGATGCTCAAACGTCTTTGCTACAGTGAAGCAATGG
AGCAGGGTCGATGAGCCTCA

Product: permease protein of oligopeptide ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MTELAQSPMRSEIRLSWIGRLRGLLPDVAPSTVVGSAVLLFWVACAVFGAQFVPFDPYAEDFLSMMTPPDAVHWFGTDQL
GRDVLSRIVVGSRDILLVAPLATLAGVTAGSVIGLVLGTFGGLVDAVGARLLDAVMSLPFIVLVTMALVAIGPSNLTVIA
VIGLAYAPLVARTVRTAAREQRERDYVSAARLAGEGRLAIMFLEILPNVRETILIELITRLGYAFFSIATLSFLGLGIQP
PSADWGLAIADGYGFLTGGKWWVVVFNSAAIISLVMATNLIAQGIGAFENGDK

Sequences:

>Translated_293_residues
MTELAQSPMRSEIRLSWIGRLRGLLPDVAPSTVVGSAVLLFWVACAVFGAQFVPFDPYAEDFLSMMTPPDAVHWFGTDQL
GRDVLSRIVVGSRDILLVAPLATLAGVTAGSVIGLVLGTFGGLVDAVGARLLDAVMSLPFIVLVTMALVAIGPSNLTVIA
VIGLAYAPLVARTVRTAAREQRERDYVSAARLAGEGRLAIMFLEILPNVRETILIELITRLGYAFFSIATLSFLGLGIQP
PSADWGLAIADGYGFLTGGKWWVVVFNSAAIISLVMATNLIAQGIGAFENGDK
>Mature_292_residues
TELAQSPMRSEIRLSWIGRLRGLLPDVAPSTVVGSAVLLFWVACAVFGAQFVPFDPYAEDFLSMMTPPDAVHWFGTDQLG
RDVLSRIVVGSRDILLVAPLATLAGVTAGSVIGLVLGTFGGLVDAVGARLLDAVMSLPFIVLVTMALVAIGPSNLTVIAV
IGLAYAPLVARTVRTAAREQRERDYVSAARLAGEGRLAIMFLEILPNVRETILIELITRLGYAFFSIATLSFLGLGIQPP
SADWGLAIADGYGFLTGGKWWVVVFNSAAIISLVMATNLIAQGIGAFENGDK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=258, Percent_Identity=34.8837209302326, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1789964, Length=247, Percent_Identity=35.6275303643725, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1787054, Length=244, Percent_Identity=30.327868852459, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787549, Length=246, Percent_Identity=31.7073170731707, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1789889, Length=205, Percent_Identity=34.6341463414634, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1787498, Length=262, Percent_Identity=29.3893129770992, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788505, Length=172, Percent_Identity=29.6511627906977, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31092; Mature: 30961

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTELAQSPMRSEIRLSWIGRLRGLLPDVAPSTVVGSAVLLFWVACAVFGAQFVPFDPYAE
CCCHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
DFLSMMTPPDAVHWFGTDQLGRDVLSRIVVGSRDILLVAPLATLAGVTAGSVIGLVLGTF
HHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH
GGLVDAVGARLLDAVMSLPFIVLVTMALVAIGPSNLTVIAVIGLAYAPLVARTVRTAARE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QRERDYVSAARLAGEGRLAIMFLEILPNVRETILIELITRLGYAFFSIATLSFLGLGIQP
HHHHHHHHHHHHCCCCCCEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PSADWGLAIADGYGFLTGGKWWVVVFNSAAIISLVMATNLIAQGIGAFENGDK
CCCCCCEEEECCCEEEECCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TELAQSPMRSEIRLSWIGRLRGLLPDVAPSTVVGSAVLLFWVACAVFGAQFVPFDPYAE
CCHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
DFLSMMTPPDAVHWFGTDQLGRDVLSRIVVGSRDILLVAPLATLAGVTAGSVIGLVLGTF
HHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH
GGLVDAVGARLLDAVMSLPFIVLVTMALVAIGPSNLTVIAVIGLAYAPLVARTVRTAARE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QRERDYVSAARLAGEGRLAIMFLEILPNVRETILIELITRLGYAFFSIATLSFLGLGIQP
HHHHHHHHHHHHCCCCCCEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PSADWGLAIADGYGFLTGGKWWVVVFNSAAIISLVMATNLIAQGIGAFENGDK
CCCCCCEEEECCCEEEECCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]