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The map label for this gene is amyD [H]

Identifier: 13472068

GI number: 13472068

Start: 1807338

End: 1808267

Strand: Direct

Name: amyD [H]

Synonym: mlr2245

Alternate gene names: 13472068

Gene position: 1807338-1808267 (Clockwise)

Preceding gene: 13472067

Following gene: 13472069

Centisome position: 25.69

GC content: 63.66

Gene sequence:

>930_bases
ATGACCACCATCACCGCAAGCACCACCGCCCCGCCCCGTGCCCGAAAGCTGGTCGGTGCCGGCCGCCGGCAGTGGATCGG
CCTCATCTATGTCGCGCCGGCGGTGGCGCTGGTCATGGTGTTCTTCGTCATCCCGCTCGGCATGACGGCGTGGATGTCGC
TGCACAACTGGCCGCTGATGGGCGAGCATACCTTCATCGGGCTCGACAATTACTGGGCGATCCTGCGCGACACCAGGTTC
TGGAATGCACTCAAATTTACCGGCTACTACACAGTGGTCGTCACCATCGCGATCTTCGCCGTCGCCTTTCCCCTGGCGAT
CTTCATCGAAAAACCGCGGCCGCTGACCAACCTCTACCGCACCTTCTTCTTCATGCCGGCGGTGGTCGGTTTCGCCTCCG
CGAGCCTGCTTTGGTCGTGGCTGCTCAACGTCGATTCCGGCCTGTTCAGCCCGGCTGCCTACGACCTCGGCCTGATCGAC
AGGAAGTTCAACCTGCTCGCCACCTTCCAGCCGGCCTTCTGGTCGATCATCGCCATGGTGGTGTGGAAGGTCGCCGGCTT
CACCATGATCATCCTGATGACCGGCCTGCAATCGATCCCGCAGGATCTGCAGGAGGCCGCCGTCATCGACGGCGCAGGAC
CGTTCGCCAGGTTCCGGGCGATCACCTTGCCGCTGATGCGCCGCACGCTGGCGCTGGCGCTGATCCTGTCGGTCGCGGGC
TCGATCCTCGCCTTCGACCAGTTCTACATCATCCTGCGCGGCGGCCCGCGTAACCAGACGCTGACGGCGGTCTACTGGAT
CTTCAACCAGTCCTTCGTGTCGTTCAAGCTAGGCTATGGCGCGGCACTGTCCATGGTGCTGCTGGTCATCCTGGTGGCGC
TCAGCCTCATCCAGCTGTGGCTGCTGCGCAAGCCCGAGGGGCTCGACTGA

Upstream 100 bases:

>100_bases
GGTGGGGTCAGCGCCAGCCCCCCACCCGGACCTGCGGTCCGACCTCCCCACAAGGGGAGGTAGGGCGGCCAACTGGATGC
GACGCAAGAACAGGCAAAGC

Downstream 100 bases:

>100_bases
TGGCGCAAGCGATTTCAGCCAGGGGCAAGCTCGCCGCACGCCTGGCCAGGCACTCCACCGGCATCATCGCCTCGCTGCTG
TTCCTGGCGCCGATCGTGTG

Product: permease protein of sugar ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MTTITASTTAPPRARKLVGAGRRQWIGLIYVAPAVALVMVFFVIPLGMTAWMSLHNWPLMGEHTFIGLDNYWAILRDTRF
WNALKFTGYYTVVVTIAIFAVAFPLAIFIEKPRPLTNLYRTFFFMPAVVGFASASLLWSWLLNVDSGLFSPAAYDLGLID
RKFNLLATFQPAFWSIIAMVVWKVAGFTMIILMTGLQSIPQDLQEAAVIDGAGPFARFRAITLPLMRRTLALALILSVAG
SILAFDQFYIILRGGPRNQTLTAVYWIFNQSFVSFKLGYGAALSMVLLVILVALSLIQLWLLRKPEGLD

Sequences:

>Translated_309_residues
MTTITASTTAPPRARKLVGAGRRQWIGLIYVAPAVALVMVFFVIPLGMTAWMSLHNWPLMGEHTFIGLDNYWAILRDTRF
WNALKFTGYYTVVVTIAIFAVAFPLAIFIEKPRPLTNLYRTFFFMPAVVGFASASLLWSWLLNVDSGLFSPAAYDLGLID
RKFNLLATFQPAFWSIIAMVVWKVAGFTMIILMTGLQSIPQDLQEAAVIDGAGPFARFRAITLPLMRRTLALALILSVAG
SILAFDQFYIILRGGPRNQTLTAVYWIFNQSFVSFKLGYGAALSMVLLVILVALSLIQLWLLRKPEGLD
>Mature_308_residues
TTITASTTAPPRARKLVGAGRRQWIGLIYVAPAVALVMVFFVIPLGMTAWMSLHNWPLMGEHTFIGLDNYWAILRDTRFW
NALKFTGYYTVVVTIAIFAVAFPLAIFIEKPRPLTNLYRTFFFMPAVVGFASASLLWSWLLNVDSGLFSPAAYDLGLIDR
KFNLLATFQPAFWSIIAMVVWKVAGFTMIILMTGLQSIPQDLQEAAVIDGAGPFARFRAITLPLMRRTLALALILSVAGS
ILAFDQFYIILRGGPRNQTLTAVYWIFNQSFVSFKLGYGAALSMVLLVILVALSLIQLWLLRKPEGLD

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=286, Percent_Identity=30.7692307692308, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787570, Length=249, Percent_Identity=27.710843373494, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34470; Mature: 34338

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTITASTTAPPRARKLVGAGRRQWIGLIYVAPAVALVMVFFVIPLGMTAWMSLHNWPLM
CCEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GEHTFIGLDNYWAILRDTRFWNALKFTGYYTVVVTIAIFAVAFPLAIFIEKPRPLTNLYR
CCCEEEECCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
TFFFMPAVVGFASASLLWSWLLNVDSGLFSPAAYDLGLIDRKFNLLATFQPAFWSIIAMV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHEECCHHHHHHHHHH
VWKVAGFTMIILMTGLQSIPQDLQEAAVIDGAGPFARFRAITLPLMRRTLALALILSVAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SILAFDQFYIILRGGPRNQTLTAVYWIFNQSFVSFKLGYGAALSMVLLVILVALSLIQLW
HHHHHEEEEEEEECCCCCCHHEEEEEECCCCHHEEECCHHHHHHHHHHHHHHHHHHHHHH
LLRKPEGLD
HHCCCCCCC
>Mature Secondary Structure 
TTITASTTAPPRARKLVGAGRRQWIGLIYVAPAVALVMVFFVIPLGMTAWMSLHNWPLM
CEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GEHTFIGLDNYWAILRDTRFWNALKFTGYYTVVVTIAIFAVAFPLAIFIEKPRPLTNLYR
CCCEEEECCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
TFFFMPAVVGFASASLLWSWLLNVDSGLFSPAAYDLGLIDRKFNLLATFQPAFWSIIAMV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHEECCHHHHHHHHHH
VWKVAGFTMIILMTGLQSIPQDLQEAAVIDGAGPFARFRAITLPLMRRTLALALILSVAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SILAFDQFYIILRGGPRNQTLTAVYWIFNQSFVSFKLGYGAALSMVLLVILVALSLIQLW
HHHHHEEEEEEEECCCCCCHHEEEEEECCCCHHEEECCHHHHHHHHHHHHHHHHHHHHHH
LLRKPEGLD
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408 [H]