Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 13471595

GI number: 13471595

Start: 1342469

End: 1343644

Strand: Direct

Name: yfdE [H]

Synonym: mlr1614

Alternate gene names: 13471595

Gene position: 1342469-1343644 (Clockwise)

Preceding gene: 13471594

Following gene: 13471596

Centisome position: 19.08

GC content: 64.2

Gene sequence:

>1176_bases
ATGGCCGAACCACCCCTGAAAGGCGTCCGCGTCGTCGAACTCGCCCGCATCCTTGCCGGGCCATGGGCCGGGCAATTGCT
TGCCGATCTCGGCGCCGACGTCATCAAGGTCGAAAGTCCCGAGGGCGGCGACGACACCCGCAAATGGGGCCCGCCCTTCG
TCATGAGCCATGACGGCGAGAACCTGTCGGCCGCTTATTACCATTCCTGCAACCGCGGCAAGCGCTCCATCGCCATCGAT
TTCTCGACGCCGGAGGGTGCGGAGACCGTGCGCCGGCTGGTCGCCACGTCGGATGTGCTGATCGAGAACTTCAAGCTCGG
CGGCCTGAAGAAATACGGGCTCGACTATGACAGCCTGCGCAAGATCAACCCGCGCCTTGTCTATTGCTCGATCACCGGCT
TCGGCCAGGACGGGCCGTATGCGCCGCGCGCCGGCTACGACTTCATCATCCAGGCCATGGCCGGTATGATGTCGATCACC
GGCGAAGTCGGCCGCGAGCCGCAAAAGGCCGGCGTCGCCATCTCGGACATCTTCACCGGGCTCTATTCCGTCATCGCCAT
ACAGGCCGCGTTGCGCCATGCCGACCGGACTGGCGAAGGCCAGCATATCGACATGGCGCTGTTTGACACGCAGATCTCGG
CGCTCGGCAACCAGAACCTCAACTACCTCGTCTCCGGCAAGTCGCCGGTGCAGATGGGCAATGCGCATATGAACATCGCG
CCTTACGAGGTGGTGCCGGTTCGGGACGGCCACATCATCCTGGCGGTCGGCAATGACGGCCAGTTCGCCAAATTCTGTGC
CGCAGTCGGGTTGGATGAACTGTCGACCAATCGCGACTTTGCCACCAATCCAGCCCGGGTCGCGAACCGGGTGAAGCTGC
GCGAACGCATCGTCGAGGCGCTGAGCACGCTCGATCGCGACCCGCTGCTGGCAAAGCTGGAAGCGGCAAGTGTGCCGGCG
AGCCCGATCAACACGATCGGCCAGATGTTTGCCGACCCGCAGACGATTGCGCGCGGCATGCGGCTCGACCTCGACGACGG
CCATGGCAATCTTCTGCCTTCGGTGCGCGCGCCGATGGTGATGTCGGGCACGCCGCTGGTCTACGAGCGCCCCTCGCCGC
GCCTGGGCGAACACACCGACGAAATCCTTGCCGAACTGGAGAGATCAGCGACATGA

Upstream 100 bases:

>100_bases
GCCCGTTGGCCTATTGCAAGGGCCGTGACAGCCGATGCCGGGCTTGATAGAGGCTCTGCTTTCGCGGCAATCATGGTGAT
TGCGGCAATCACGGTGATTT

Downstream 100 bases:

>100_bases
AGACCGGTGGACAACTGATCGTCGATGCGCTGGAAGCGAACGGCACCGACCGCATCTTCTGCGTGCCGGGCGAATCCTAT
CTGGCGGTGCTCGACGCGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MAEPPLKGVRVVELARILAGPWAGQLLADLGADVIKVESPEGGDDTRKWGPPFVMSHDGENLSAAYYHSCNRGKRSIAID
FSTPEGAETVRRLVATSDVLIENFKLGGLKKYGLDYDSLRKINPRLVYCSITGFGQDGPYAPRAGYDFIIQAMAGMMSIT
GEVGREPQKAGVAISDIFTGLYSVIAIQAALRHADRTGEGQHIDMALFDTQISALGNQNLNYLVSGKSPVQMGNAHMNIA
PYEVVPVRDGHIILAVGNDGQFAKFCAAVGLDELSTNRDFATNPARVANRVKLRERIVEALSTLDRDPLLAKLEAASVPA
SPINTIGQMFADPQTIARGMRLDLDDGHGNLLPSVRAPMVMSGTPLVYERPSPRLGEHTDEILAELERSAT

Sequences:

>Translated_391_residues
MAEPPLKGVRVVELARILAGPWAGQLLADLGADVIKVESPEGGDDTRKWGPPFVMSHDGENLSAAYYHSCNRGKRSIAID
FSTPEGAETVRRLVATSDVLIENFKLGGLKKYGLDYDSLRKINPRLVYCSITGFGQDGPYAPRAGYDFIIQAMAGMMSIT
GEVGREPQKAGVAISDIFTGLYSVIAIQAALRHADRTGEGQHIDMALFDTQISALGNQNLNYLVSGKSPVQMGNAHMNIA
PYEVVPVRDGHIILAVGNDGQFAKFCAAVGLDELSTNRDFATNPARVANRVKLRERIVEALSTLDRDPLLAKLEAASVPA
SPINTIGQMFADPQTIARGMRLDLDDGHGNLLPSVRAPMVMSGTPLVYERPSPRLGEHTDEILAELERSAT
>Mature_390_residues
AEPPLKGVRVVELARILAGPWAGQLLADLGADVIKVESPEGGDDTRKWGPPFVMSHDGENLSAAYYHSCNRGKRSIAIDF
STPEGAETVRRLVATSDVLIENFKLGGLKKYGLDYDSLRKINPRLVYCSITGFGQDGPYAPRAGYDFIIQAMAGMMSITG
EVGREPQKAGVAISDIFTGLYSVIAIQAALRHADRTGEGQHIDMALFDTQISALGNQNLNYLVSGKSPVQMGNAHMNIAP
YEVVPVRDGHIILAVGNDGQFAKFCAAVGLDELSTNRDFATNPARVANRVKLRERIVEALSTLDRDPLLAKLEAASVPAS
PINTIGQMFADPQTIARGMRLDLDDGHGNLLPSVRAPMVMSGTPLVYERPSPRLGEHTDEILAELERSAT

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=385, Percent_Identity=41.038961038961, Blast_Score=301, Evalue=6e-82,
Organism=Homo sapiens, GI300863124, Length=410, Percent_Identity=39.5121951219512, Blast_Score=293, Evalue=1e-79,
Organism=Homo sapiens, GI13376042, Length=410, Percent_Identity=36.3414634146341, Blast_Score=249, Evalue=3e-66,
Organism=Homo sapiens, GI300863126, Length=385, Percent_Identity=35.8441558441558, Blast_Score=246, Evalue=3e-65,
Organism=Homo sapiens, GI266456254, Length=389, Percent_Identity=26.2210796915167, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI42794625, Length=389, Percent_Identity=26.2210796915167, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI266458397, Length=200, Percent_Identity=36, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI266458393, Length=200, Percent_Identity=36, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI266458395, Length=150, Percent_Identity=36.6666666666667, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI42822893, Length=150, Percent_Identity=36.6666666666667, Blast_Score=99, Evalue=1e-20,
Organism=Escherichia coli, GI87082093, Length=383, Percent_Identity=35.7702349869452, Blast_Score=244, Evalue=5e-66,
Organism=Escherichia coli, GI1788717, Length=408, Percent_Identity=28.4313725490196, Blast_Score=161, Evalue=6e-41,
Organism=Escherichia coli, GI1786222, Length=346, Percent_Identity=25.1445086705202, Blast_Score=100, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=205, Percent_Identity=29.7560975609756, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=207, Percent_Identity=32.3671497584541, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24648431, Length=382, Percent_Identity=43.717277486911, Blast_Score=303, Evalue=2e-82,
Organism=Drosophila melanogaster, GI24585488, Length=209, Percent_Identity=34.4497607655502, Blast_Score=114, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42194; Mature: 42062

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEPPLKGVRVVELARILAGPWAGQLLADLGADVIKVESPEGGDDTRKWGPPFVMSHDGE
CCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCCC
NLSAAYYHSCNRGKRSIAIDFSTPEGAETVRRLVATSDVLIENFKLGGLKKYGLDYDSLR
CCCHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHH
KINPRLVYCSITGFGQDGPYAPRAGYDFIIQAMAGMMSITGEVGREPQKAGVAISDIFTG
CCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCEEHHHHHHH
LYSVIAIQAALRHADRTGEGQHIDMALFDTQISALGNQNLNYLVSGKSPVQMGNAHMNIA
HHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHCCCCCEEEECCCCCCEECCCEEEEC
PYEVVPVRDGHIILAVGNDGQFAKFCAAVGLDELSTNRDFATNPARVANRVKLRERIVEA
CEEEEEECCCEEEEEECCCCCHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
LSTLDRDPLLAKLEAASVPASPINTIGQMFADPQTIARGMRLDLDDGHGNLLPSVRAPMV
HHHCCCCCHHHHHHHCCCCCCHHHHHHHHHCCHHHHHCCCEEEEECCCCCCCCCCCCCEE
MSGTPLVYERPSPRLGEHTDEILAELERSAT
ECCCCEEEECCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
AEPPLKGVRVVELARILAGPWAGQLLADLGADVIKVESPEGGDDTRKWGPPFVMSHDGE
CCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCCC
NLSAAYYHSCNRGKRSIAIDFSTPEGAETVRRLVATSDVLIENFKLGGLKKYGLDYDSLR
CCCHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHH
KINPRLVYCSITGFGQDGPYAPRAGYDFIIQAMAGMMSITGEVGREPQKAGVAISDIFTG
CCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCEEHHHHHHH
LYSVIAIQAALRHADRTGEGQHIDMALFDTQISALGNQNLNYLVSGKSPVQMGNAHMNIA
HHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHCCCCCEEEECCCCCCEECCCEEEEC
PYEVVPVRDGHIILAVGNDGQFAKFCAAVGLDELSTNRDFATNPARVANRVKLRERIVEA
CEEEEEECCCEEEEEECCCCCHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
LSTLDRDPLLAKLEAASVPASPINTIGQMFADPQTIARGMRLDLDDGHGNLLPSVRAPMV
HHHCCCCCHHHHHHHCCCCCCHHHHHHHHHCCHHHHHCCCEEEEECCCCCCCCCCCCCEE
MSGTPLVYERPSPRLGEHTDEILAELERSAT
ECCCCEEEECCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]