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The map label for this gene is ycfQ [H]

Identifier: 13471583

GI number: 13471583

Start: 1331432

End: 1332061

Strand: Reverse

Name: ycfQ [H]

Synonym: mll1598

Alternate gene names: 13471583

Gene position: 1332061-1331432 (Counterclockwise)

Preceding gene: 13471586

Following gene: 13471582

Centisome position: 18.93

GC content: 66.67

Gene sequence:

>630_bases
ATGGATAATTTGGAAAAGGCTAGGGGTGGTCGTCCCCGCGCGTTCGACCCCGACCGGGCGCTGGATGCGGCGATGCATCT
GTTCTGGGAGCATGGCTATGAGGCGACGTCGCTGGCGATGCTGCGCGAGGCGATGGGGCTGACGCCGCCGCAGATCTACA
ACGCCTTCACCGACAAGGAGACTTTGTTCCGCAAGGCGCTGACGCGCTACCACGAGACGGAGATCGGCTTTGCGCTGGAC
GCGCTGAGCGCGCCGGTGCCGACGCCCGAGGCGATCCGGCGGTTGCTGCTGGGCGCGGCGGAGGCCTATTCCAGGCCCGG
CAAGCCGGGCGGATGCCTTTTCGTCAGCGGTGCCCTGGCAGCCTCACCGCGGGCGCAGGCCATCGCGGATGAACTCAAGG
CCTATCGCAAGGCAAGCGAGGCGGCGATCGCGGAGCGTCTGGCCATGGGCCAAGCGGCGGGCGATCTGCCAGAAGGCTTC
TCCGTCGAGAGCTTCGCCAAATACATCGCCGGCGTCATGAACGGCATGTCGATCCAGGCGCGGGACGGCGCCTCGGCCGA
AGAGTTGCGCATTATGGCCCAAACCGCTCTTGCGGCCTTGCCGCCCGAAGGGCAAAAACGGGGAGCATGA

Upstream 100 bases:

>100_bases
GCACGGCCTTGCCGGAACATCGTCTTCCGGCTTGCCATGTTTCGTATCAATTGTTACGTTACGCACGGCGAGCAAGTCAA
CAGGTTTCGTATCGATCACT

Downstream 100 bases:

>100_bases
TTCAAGGACCGAACGCCATGCTGGATCTTTTCCCCGAAGCCGAGAAGCCGGTCGAAATCATTCCGGCGAAGAAGCTTTCC
GCTCGCGCCGCAGCGCTCTA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MDNLEKARGGRPRAFDPDRALDAAMHLFWEHGYEATSLAMLREAMGLTPPQIYNAFTDKETLFRKALTRYHETEIGFALD
ALSAPVPTPEAIRRLLLGAAEAYSRPGKPGGCLFVSGALAASPRAQAIADELKAYRKASEAAIAERLAMGQAAGDLPEGF
SVESFAKYIAGVMNGMSIQARDGASAEELRIMAQTALAALPPEGQKRGA

Sequences:

>Translated_209_residues
MDNLEKARGGRPRAFDPDRALDAAMHLFWEHGYEATSLAMLREAMGLTPPQIYNAFTDKETLFRKALTRYHETEIGFALD
ALSAPVPTPEAIRRLLLGAAEAYSRPGKPGGCLFVSGALAASPRAQAIADELKAYRKASEAAIAERLAMGQAAGDLPEGF
SVESFAKYIAGVMNGMSIQARDGASAEELRIMAQTALAALPPEGQKRGA
>Mature_209_residues
MDNLEKARGGRPRAFDPDRALDAAMHLFWEHGYEATSLAMLREAMGLTPPQIYNAFTDKETLFRKALTRYHETEIGFALD
ALSAPVPTPEAIRRLLLGAAEAYSRPGKPGGCLFVSGALAASPRAQAIADELKAYRKASEAAIAERLAMGQAAGDLPEGF
SVESFAKYIAGVMNGMSIQARDGASAEELRIMAQTALAALPPEGQKRGA

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=205, Percent_Identity=37.5609756097561, Blast_Score=134, Evalue=4e-33,
Organism=Escherichia coli, GI87082397, Length=180, Percent_Identity=33.8888888888889, Blast_Score=96, Evalue=1e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22353; Mature: 22353

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNLEKARGGRPRAFDPDRALDAAMHLFWEHGYEATSLAMLREAMGLTPPQIYNAFTDKE
CCCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
TLFRKALTRYHETEIGFALDALSAPVPTPEAIRRLLLGAAEAYSRPGKPGGCLFVSGALA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHH
ASPRAQAIADELKAYRKASEAAIAERLAMGQAAGDLPEGFSVESFAKYIAGVMNGMSIQA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEC
RDGASAEELRIMAQTALAALPPEGQKRGA
CCCCCHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MDNLEKARGGRPRAFDPDRALDAAMHLFWEHGYEATSLAMLREAMGLTPPQIYNAFTDKE
CCCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
TLFRKALTRYHETEIGFALDALSAPVPTPEAIRRLLLGAAEAYSRPGKPGGCLFVSGALA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHH
ASPRAQAIADELKAYRKASEAAIAERLAMGQAAGDLPEGFSVESFAKYIAGVMNGMSIQA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEC
RDGASAEELRIMAQTALAALPPEGQKRGA
CCCCCHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]