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The map label for this gene is lrpC [H]

Identifier: 13471501

GI number: 13471501

Start: 1239224

End: 1239751

Strand: Reverse

Name: lrpC [H]

Synonym: mll1492

Alternate gene names: 13471501

Gene position: 1239751-1239224 (Counterclockwise)

Preceding gene: 13471503

Following gene: 13471498

Centisome position: 17.62

GC content: 63.07

Gene sequence:

>528_bases
ATGGCCGGCCTCTCTCGCAATCTCATTTCCAAAGGCAAGGATTTATCCGTGAAACGCCTTCGAACTGAAAATATCGATCT
CGACGCGGCCGACATGAAGATCCTGCGCCTGCTGCAAAAGGATGCGCGCGCCAGCACGGCGGAGCTGGCGCGTTCGGTCG
GCCTGTCGGCGCCGAGTGTTGCCGAGCGCATCAAGCGGCTGCAGGAAAACGGCGTGATCGAGGCCTATTGCGTCAAGATC
AACCCCGCCGCGCTGGGCCTGAAGCTGTCGGCATGGCTGCGCATCCGGCCGGTGCCTGGGCAATTGTCCGTGGTGGCCGA
GATCATCCGCGAAACGCCTGAGATCGCGCAATGCGACCGCGTGACCGGCGAGGATTGCTTCATCGCGCTCGCGCATGTCG
GCTCGGTAGCCGAACTCGAACGGGTAATCGACCGGATCATTCCCTATGCGATGACGAATACGGCCATCATCCAGTCGTCA
CCGGTGGTGGCGCGCTCGCCGCTGGCGGCGGTGAAGCGGTCGCCGTGA

Upstream 100 bases:

>100_bases
GTCGCCAGGCTGTCGAGGGCGGCAGGGCGGGCAGCGGGTGCTTGCGTCTGATCGTTCATCGGATCAGTATCGCAGGCAGT
TTTTCCACTTTATATGGCGA

Downstream 100 bases:

>100_bases
ACTGCGTGATTTGATCTTCGCGAGCCGTTTCGCCAGGCTACGCGTGGCCGCGCTTCAGGCGGGCGCGCTTCAAGATGCTG
CGCCAGCGGATCATGTCGAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MAGLSRNLISKGKDLSVKRLRTENIDLDAADMKILRLLQKDARASTAELARSVGLSAPSVAERIKRLQENGVIEAYCVKI
NPAALGLKLSAWLRIRPVPGQLSVVAEIIRETPEIAQCDRVTGEDCFIALAHVGSVAELERVIDRIIPYAMTNTAIIQSS
PVVARSPLAAVKRSP

Sequences:

>Translated_175_residues
MAGLSRNLISKGKDLSVKRLRTENIDLDAADMKILRLLQKDARASTAELARSVGLSAPSVAERIKRLQENGVIEAYCVKI
NPAALGLKLSAWLRIRPVPGQLSVVAEIIRETPEIAQCDRVTGEDCFIALAHVGSVAELERVIDRIIPYAMTNTAIIQSS
PVVARSPLAAVKRSP
>Mature_174_residues
AGLSRNLISKGKDLSVKRLRTENIDLDAADMKILRLLQKDARASTAELARSVGLSAPSVAERIKRLQENGVIEAYCVKIN
PAALGLKLSAWLRIRPVPGQLSVVAEIIRETPEIAQCDRVTGEDCFIALAHVGSVAELERVIDRIIPYAMTNTAIIQSSP
VVARSPLAAVKRSP

Specific function: Transcriptional regulator with a possible role in regulation of amino acid metabolism. Plays a role in the growth phase transition [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787116, Length=121, Percent_Identity=31.404958677686, Blast_Score=67, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR000835
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18961; Mature: 18830

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGLSRNLISKGKDLSVKRLRTENIDLDAADMKILRLLQKDARASTAELARSVGLSAPSV
CCCCHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHH
AERIKRLQENGVIEAYCVKINPAALGLKLSAWLRIRPVPGQLSVVAEIIRETPEIAQCDR
HHHHHHHHHCCCEEEEEEEECHHHHCEEEEEEEEEECCCCHHHHHHHHHHCCCCHHHHCC
VTGEDCFIALAHVGSVAELERVIDRIIPYAMTNTAIIQSSPVVARSPLAAVKRSP
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHCCCC
>Mature Secondary Structure 
AGLSRNLISKGKDLSVKRLRTENIDLDAADMKILRLLQKDARASTAELARSVGLSAPSV
CCCHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHH
AERIKRLQENGVIEAYCVKINPAALGLKLSAWLRIRPVPGQLSVVAEIIRETPEIAQCDR
HHHHHHHHHCCCEEEEEEEECHHHHCEEEEEEEEEECCCCHHHHHHHHHHCCCCHHHHCC
VTGEDCFIALAHVGSVAELERVIDRIIPYAMTNTAIIQSSPVVARSPLAAVKRSP
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9341680 [H]