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The map label for this gene is ycaK [H]

Identifier: 13471346

GI number: 13471346

Start: 1088060

End: 1088641

Strand: Reverse

Name: ycaK [H]

Synonym: mll1288

Alternate gene names: 13471346

Gene position: 1088641-1088060 (Counterclockwise)

Preceding gene: 13471347

Following gene: 13471345

Centisome position: 15.47

GC content: 63.06

Gene sequence:

>582_bases
ATGAACATCCTCGTCCTCTACGCCCATCCGGTCGAGACCAGCTTCAATGCCGGCCTGCACCGGTTGATCGTCGAGCGGCT
GACCGCAGCGGGCCATACGATCGATGACTGTGACCTCTATGCCGAGGATTTCGACCCGCGGCTGATGCGCCAGGAGCGGC
TGGATTATCACAACCAGCGCGGCGCCGCGGACCCGGCGTCGCCTTATGTCGAGCGCCTGCTGCGTGCCGAGGCGCTGGTG
CTTTCCTATCCGGTCTGGAACTACGGCTTTCCGGCGATCCTCAAGGGTTTTTTCGACCGCGTCTTCCTGCCCGGCGTGTC
GTTCAGGCTGGTCGACGGCAAGGTGCAGCCGTCGCTGCACAACATCCGTAAGGTCGCGGCCGTCACCACCTATGGCGGCA
GCCGGTTCCGCGCCATGGTGATGGGCGATCCGCCACGCAGGTTGGTCAAGCGCATGCTGCGCGCCACAGTAAAGCCCCGC
GCGCCGGTGACTTATCTCGCGCATTACGCGATGAACCTGTCGACCGACCAAACGCGAAAATCCTTCATGACGAAGGTTGC
GGCGAGCATGGATGCATTCTGA

Upstream 100 bases:

>100_bases
GCCTGCTCAATCCCGGCAAGATGATCGCCTGGGAAAATCCGGACTATGACTATCGTTCCGGCCGGACTTTTTTGTTCAAG
GGGCTGCAAAAGGCAGGCTG

Downstream 100 bases:

>100_bases
TGCGTGTCCTCGTGGTCTATTGCCATCCGGTGCCGGAAAGCTTTTGCGCGGCAATCCGCGACACCGCTCTGGATGTGCTC
AAGGCCAGGGGCTGCCAGGT

Product: NAD(P)H dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MNILVLYAHPVETSFNAGLHRLIVERLTAAGHTIDDCDLYAEDFDPRLMRQERLDYHNQRGAADPASPYVERLLRAEALV
LSYPVWNYGFPAILKGFFDRVFLPGVSFRLVDGKVQPSLHNIRKVAAVTTYGGSRFRAMVMGDPPRRLVKRMLRATVKPR
APVTYLAHYAMNLSTDQTRKSFMTKVAASMDAF

Sequences:

>Translated_193_residues
MNILVLYAHPVETSFNAGLHRLIVERLTAAGHTIDDCDLYAEDFDPRLMRQERLDYHNQRGAADPASPYVERLLRAEALV
LSYPVWNYGFPAILKGFFDRVFLPGVSFRLVDGKVQPSLHNIRKVAAVTTYGGSRFRAMVMGDPPRRLVKRMLRATVKPR
APVTYLAHYAMNLSTDQTRKSFMTKVAASMDAF
>Mature_193_residues
MNILVLYAHPVETSFNAGLHRLIVERLTAAGHTIDDCDLYAEDFDPRLMRQERLDYHNQRGAADPASPYVERLLRAEALV
LSYPVWNYGFPAILKGFFDRVFLPGVSFRLVDGKVQPSLHNIRKVAAVTTYGGSRFRAMVMGDPPRRLVKRMLRATVKPR
APVTYLAHYAMNLSTDQTRKSFMTKVAASMDAF

Specific function: Unknown

COG id: COG2249

COG function: function code R; Putative NADPH-quinone reductase (modulator of drug activity B)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NAD(P)H dehydrogenase (quinone) family [H]

Homologues:

Organism=Homo sapiens, GI156564357, Length=125, Percent_Identity=29.6, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1787129, Length=170, Percent_Identity=30, Blast_Score=68, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003680 [H]

Pfam domain/function: PF02525 Flavodoxin_2 [H]

EC number: 1.6.99.- [C]

Molecular weight: Translated: 21876; Mature: 21876

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILVLYAHPVETSFNAGLHRLIVERLTAAGHTIDDCDLYAEDFDPRLMRQERLDYHNQR
CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCC
GAADPASPYVERLLRAEALVLSYPVWNYGFPAILKGFFDRVFLPGVSFRLVDGKVQPSLH
CCCCCCCHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH
NIRKVAAVTTYGGSRFRAMVMGDPPRRLVKRMLRATVKPRAPVTYLAHYAMNLSTDQTRK
HHHHHHHHEECCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHH
SFMTKVAASMDAF
HHHHHHHHHHCCC
>Mature Secondary Structure
MNILVLYAHPVETSFNAGLHRLIVERLTAAGHTIDDCDLYAEDFDPRLMRQERLDYHNQR
CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCC
GAADPASPYVERLLRAEALVLSYPVWNYGFPAILKGFFDRVFLPGVSFRLVDGKVQPSLH
CCCCCCCHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH
NIRKVAAVTTYGGSRFRAMVMGDPPRRLVKRMLRATVKPRAPVTYLAHYAMNLSTDQTRK
HHHHHHHHEECCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHH
SFMTKVAASMDAF
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 3053170; 7567469 [H]