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The map label for this gene is ydcR [H]

Identifier: 13471226

GI number: 13471226

Start: 954666

End: 956084

Strand: Direct

Name: ydcR [H]

Synonym: mlr1139

Alternate gene names: 13471226

Gene position: 954666-956084 (Clockwise)

Preceding gene: 13471224

Following gene: 13471228

Centisome position: 13.57

GC content: 67.65

Gene sequence:

>1419_bases
ATGACCGACCTCACCTTGGAAACCGATGTCGCGCGAACCCTAAGCGCCCCTACTCTGGTCGAAAGCGTCATGGCGACGAT
CCGCCAGCGGATCGCCGCGCGCAGCCTGACACCGGGAGCCCGGCTGCCGTCGATCCGAGCCTTCGCCCAATCCATGCAAG
TGTCCAAATCCACCGTGGTCGAAGCCTATGAACGGCTCGCCGCCGAAGGCGCGATCCGCTCCCGGCCGGGCTCGGGCTTC
TATGCCGCCGGCTCGCTGGCACCGCTGTCGCTGGCCGAGATCGGTCCCCGGCTCGACCGTGCCGTCGATCCGCTCTGGGT
CTCGCGCCAGTCGCTGGACGCCGGCGACGAGGTGCTGAAACCCGGCTGCGGCTGGCTGCCGGCCTCCTGGATGCCGCAGG
CCGCGCTGCGGCGCGCACTGCGCACGGCAGCGCGCGCCGACGATGTCGCGCTGGCCGACTACGGCACGCCGCTTGGGCTG
CCGCCGCTGCGGCAACTCTTGGCGCGGCGCATGGCCGGTCATGGCATCGAAGTTTCGCCTGAACAGATCATGCTGACGGA
ATCGGGTACGCAGGCCATCGATCTTCTGTGCCGGTTCCTGATCGAACCCGGCGACACGGTGCTCGTCGACGATCCCTGCT
ATTTCAACTTCCACGCTTTGCTGCGCGCCCATCGCGCCAAGGTGATCGGCGTTCCCTACACGCCGTCGGGGCCCGATATC
GAGCTGTTCGCGCAGGCGCTCGCCGAGCACCGGCCGCGCCTCTACATCACCAACTCCGCCATCCACAACCCGACCGGCGC
GATCCTGTCGCCTGTCATTGCGCATCGTTTGCTGAAGCTCGCCGACCAGTCGGACCTGACCATCGTCGAGGACGACATCT
TCGCCGATTTCGAGCACACCCCTGCCCCGAGGCTGGCGGCTTTCGATGGTCTCAACCGCGTCGTCCAGATCGGCAGCTTC
TCCAAGACGCTGTCGGCGTCGGTGCGCTGCGGCTTCATCGCCGCGCCCCGAGACTGGATCGAGGGCCTGACCGACCTCAA
GATCGCCACGACCTTCGGCGGCGGACGGCTGGCCGCCGAACTGGTGCTGACGCTGCTGAAGGACGGCAGTTACCGCAAGC
ATATGGATCTGCTGCGCGCCAGGCTCGCGCACGCCATGGCCGAGACCGTCGCCCGGCTGAGGGCGATCGGCATCACGCCC
TGGATCGACCAGCCGGCCGGTCTGTTCCTGTGGTGCGGCCTGCCCGACGGTGTTGACGCGGCCGAAGTCGCACGCCGGGC
GCTTAGAGACAACGTAGTGCTGGCGCCCGGCAATGCGTTCAGCCTGTCCCGGACGGCCAGCCATTTCCTGCGCTTCAATG
TCGCCCAGTGCGAAGACCAGCGGATTTTCAAGGTGCTCGAGGCGGCGATGGCGCGCTGA

Upstream 100 bases:

>100_bases
GCTCCATTGCTTTCGCCCTCTATCGGGCAGATGCCATGGTGCAGCCAGAGACAATGCGGTACAATTACACGAAACTGTAA
TGGCATATCGAGCAATACAG

Downstream 100 bases:

>100_bases
TCTCACCGACTTGCACAGACCTCCCGCACGCATTCGCGCAACCAGCGTTGCGCCGGGTCGGCATCGAGGCGCGGATGCCA
GAGCATCGAAATGGTGACTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 471

Protein sequence:

>472_residues
MTDLTLETDVARTLSAPTLVESVMATIRQRIAARSLTPGARLPSIRAFAQSMQVSKSTVVEAYERLAAEGAIRSRPGSGF
YAAGSLAPLSLAEIGPRLDRAVDPLWVSRQSLDAGDEVLKPGCGWLPASWMPQAALRRALRTAARADDVALADYGTPLGL
PPLRQLLARRMAGHGIEVSPEQIMLTESGTQAIDLLCRFLIEPGDTVLVDDPCYFNFHALLRAHRAKVIGVPYTPSGPDI
ELFAQALAEHRPRLYITNSAIHNPTGAILSPVIAHRLLKLADQSDLTIVEDDIFADFEHTPAPRLAAFDGLNRVVQIGSF
SKTLSASVRCGFIAAPRDWIEGLTDLKIATTFGGGRLAAELVLTLLKDGSYRKHMDLLRARLAHAMAETVARLRAIGITP
WIDQPAGLFLWCGLPDGVDAAEVARRALRDNVVLAPGNAFSLSRTASHFLRFNVAQCEDQRIFKVLEAAMAR

Sequences:

>Translated_472_residues
MTDLTLETDVARTLSAPTLVESVMATIRQRIAARSLTPGARLPSIRAFAQSMQVSKSTVVEAYERLAAEGAIRSRPGSGF
YAAGSLAPLSLAEIGPRLDRAVDPLWVSRQSLDAGDEVLKPGCGWLPASWMPQAALRRALRTAARADDVALADYGTPLGL
PPLRQLLARRMAGHGIEVSPEQIMLTESGTQAIDLLCRFLIEPGDTVLVDDPCYFNFHALLRAHRAKVIGVPYTPSGPDI
ELFAQALAEHRPRLYITNSAIHNPTGAILSPVIAHRLLKLADQSDLTIVEDDIFADFEHTPAPRLAAFDGLNRVVQIGSF
SKTLSASVRCGFIAAPRDWIEGLTDLKIATTFGGGRLAAELVLTLLKDGSYRKHMDLLRARLAHAMAETVARLRAIGITP
WIDQPAGLFLWCGLPDGVDAAEVARRALRDNVVLAPGNAFSLSRTASHFLRFNVAQCEDQRIFKVLEAAMAR
>Mature_471_residues
TDLTLETDVARTLSAPTLVESVMATIRQRIAARSLTPGARLPSIRAFAQSMQVSKSTVVEAYERLAAEGAIRSRPGSGFY
AAGSLAPLSLAEIGPRLDRAVDPLWVSRQSLDAGDEVLKPGCGWLPASWMPQAALRRALRTAARADDVALADYGTPLGLP
PLRQLLARRMAGHGIEVSPEQIMLTESGTQAIDLLCRFLIEPGDTVLVDDPCYFNFHALLRAHRAKVIGVPYTPSGPDIE
LFAQALAEHRPRLYITNSAIHNPTGAILSPVIAHRLLKLADQSDLTIVEDDIFADFEHTPAPRLAAFDGLNRVVQIGSFS
KTLSASVRCGFIAAPRDWIEGLTDLKIATTFGGGRLAAELVLTLLKDGSYRKHMDLLRARLAHAMAETVARLRAIGITPW
IDQPAGLFLWCGLPDGVDAAEVARRALRDNVVLAPGNAFSLSRTASHFLRFNVAQCEDQRIFKVLEAAMAR

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=363, Percent_Identity=26.7217630853994, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI33469970, Length=363, Percent_Identity=26.7217630853994, Blast_Score=94, Evalue=2e-19,
Organism=Escherichia coli, GI1787710, Length=446, Percent_Identity=30.7174887892377, Blast_Score=168, Evalue=5e-43,
Organism=Escherichia coli, GI1790797, Length=440, Percent_Identity=28.8636363636364, Blast_Score=143, Evalue=2e-35,
Organism=Drosophila melanogaster, GI21356535, Length=351, Percent_Identity=21.6524216524217, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51186; Mature: 51054

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLTLETDVARTLSAPTLVESVMATIRQRIAARSLTPGARLPSIRAFAQSMQVSKSTVV
CCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
EAYERLAAEGAIRSRPGSGFYAAGSLAPLSLAEIGPRLDRAVDPLWVSRQSLDAGDEVLK
HHHHHHHHCCCCCCCCCCCEEECCCCCCHHHHHHCHHHHHHCCCHHHHHHHCCCCHHHHC
PGCGWLPASWMPQAALRRALRTAARADDVALADYGTPLGLPPLRQLLARRMAGHGIEVSP
CCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCC
EQIMLTESGTQAIDLLCRFLIEPGDTVLVDDPCYFNFHALLRAHRAKVIGVPYTPSGPDI
CEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCH
ELFAQALAEHRPRLYITNSAIHNPTGAILSPVIAHRLLKLADQSDLTIVEDDIFADFEHT
HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECHHHCCCCCC
PAPRLAAFDGLNRVVQIGSFSKTLSASVRCGFIAAPRDWIEGLTDLKIATTFGGGRLAAE
CCCHHHHHHHHHHHHHHCCCHHHHHHHCEEEEEECCHHHHCCHHCCEEEEECCCHHHHHH
LVLTLLKDGSYRKHMDLLRARLAHAMAETVARLRAIGITPWIDQPAGLFLWCGLPDGVDA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCH
AEVARRALRDNVVLAPGNAFSLSRTASHFLRFNVAQCEDQRIFKVLEAAMAR
HHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
TDLTLETDVARTLSAPTLVESVMATIRQRIAARSLTPGARLPSIRAFAQSMQVSKSTVV
CCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
EAYERLAAEGAIRSRPGSGFYAAGSLAPLSLAEIGPRLDRAVDPLWVSRQSLDAGDEVLK
HHHHHHHHCCCCCCCCCCCEEECCCCCCHHHHHHCHHHHHHCCCHHHHHHHCCCCHHHHC
PGCGWLPASWMPQAALRRALRTAARADDVALADYGTPLGLPPLRQLLARRMAGHGIEVSP
CCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCC
EQIMLTESGTQAIDLLCRFLIEPGDTVLVDDPCYFNFHALLRAHRAKVIGVPYTPSGPDI
CEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCH
ELFAQALAEHRPRLYITNSAIHNPTGAILSPVIAHRLLKLADQSDLTIVEDDIFADFEHT
HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECHHHCCCCCC
PAPRLAAFDGLNRVVQIGSFSKTLSASVRCGFIAAPRDWIEGLTDLKIATTFGGGRLAAE
CCCHHHHHHHHHHHHHHCCCHHHHHHHCEEEEEECCHHHHCCHHCCEEEEECCCHHHHHH
LVLTLLKDGSYRKHMDLLRARLAHAMAETVARLRAIGITPWIDQPAGLFLWCGLPDGVDA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCH
AEVARRALRDNVVLAPGNAFSLSRTASHFLRFNVAQCEDQRIFKVLEAAMAR
HHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]