| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is 13470480
Identifier: 13470480
GI number: 13470480
Start: 135949
End: 136545
Strand: Direct
Name: 13470480
Synonym: mlr0199
Alternate gene names: NA
Gene position: 135949-136545 (Clockwise)
Preceding gene: 13470479
Following gene: 13470481
Centisome position: 1.93
GC content: 64.82
Gene sequence:
>597_bases ATGAGCTTTTTCAATCGGATATCGACGGGCGGTCTGACGCTAGCCGCCGGCCTCGCCGTCAGCACCGCGGCCTTTGCGGC GTCGCCCGCACCGGCGACACCCGCCGCTCCCGCACCAGCCGCGCCCGCGGGATCGGATCGCATCACCAACCCGGTTGCCG AGTTTGCCGGCATCGACAAGATCACCGGCCGCATCATCACCTTCGACGTCTACATCGATGAGACGGTGCAGTTCGGCGCT TTGCAGGTGACGCCGCGCGTCTGTTATTCCCGGCCGCAGAACGAGGAGCCGAAGACCGATTCCTTCGTCGAGGTCGACGA GATCACGCTCGACCGCAAGATCCGCCGCATCTTCACCGGCTGGATGTTCGCCGAAAGCCCGGGCCTCAACGCCGTCGAGC ATGCCGTCTATGACGTCTGGCTGAAGGAATGCAAACAGAAGTCCGATGTGCCGGCGCCGGATGCCACCAAGGCTGATGCA CCCAAGGCCGATGCTTCGAAGCCGGTCGCGACCAAACCAGCCGCCGCCAAGCCTGCGGCCAGCCCGGATGCGGAACAGCC CGATCCCACGCAACCGGATACATCAGACGCCAACTGA
Upstream 100 bases:
>100_bases TGTCGCCACAATTGGTGTTTAGCTGCTTGCTGATCAGAAAACGGCGACTAGCCTTGGCGATCGACGGAATCACCCGGGCA CGAACCACCGGTACCCCTAT
Downstream 100 bases:
>100_bases TCCCTGGGAACCGTCGTGGCCACCATGCGTTGGACCACAGACGACCGCGCATCGACGCGCCCGGAGGATATTTCGATGTC GGACACCAAGCGAATCACGG
Product: cellulase-like protein
Products: NA
Alternate protein names: Signal Peptide Protein; Signal Peptide
Number of amino acids: Translated: 198; Mature: 197
Protein sequence:
>198_residues MSFFNRISTGGLTLAAGLAVSTAAFAASPAPATPAAPAPAAPAGSDRITNPVAEFAGIDKITGRIITFDVYIDETVQFGA LQVTPRVCYSRPQNEEPKTDSFVEVDEITLDRKIRRIFTGWMFAESPGLNAVEHAVYDVWLKECKQKSDVPAPDATKADA PKADASKPVATKPAAAKPAASPDAEQPDPTQPDTSDAN
Sequences:
>Translated_198_residues MSFFNRISTGGLTLAAGLAVSTAAFAASPAPATPAAPAPAAPAGSDRITNPVAEFAGIDKITGRIITFDVYIDETVQFGA LQVTPRVCYSRPQNEEPKTDSFVEVDEITLDRKIRRIFTGWMFAESPGLNAVEHAVYDVWLKECKQKSDVPAPDATKADA PKADASKPVATKPAAAKPAASPDAEQPDPTQPDTSDAN >Mature_197_residues SFFNRISTGGLTLAAGLAVSTAAFAASPAPATPAAPAPAAPAGSDRITNPVAEFAGIDKITGRIITFDVYIDETVQFGAL QVTPRVCYSRPQNEEPKTDSFVEVDEITLDRKIRRIFTGWMFAESPGLNAVEHAVYDVWLKECKQKSDVPAPDATKADAP KADASKPVATKPAAAKPAASPDAEQPDPTQPDTSDAN
Specific function: Unknown
COG id: COG4765
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20857; Mature: 20726
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFFNRISTGGLTLAAGLAVSTAAFAASPAPATPAAPAPAAPAGSDRITNPVAEFAGIDK CCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHH ITGRIITFDVYIDETVQFGALQVTPRVCYSRPQNEEPKTDSFVEVDEITLDRKIRRIFTG HCCEEEEEEEEECCCCCCCEEEECHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHH WMFAESPGLNAVEHAVYDVWLKECKQKSDVPAPDATKADAPKADASKPVATKPAAAKPAA HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SPDAEQPDPTQPDTSDAN CCCCCCCCCCCCCCCCCC >Mature Secondary Structure SFFNRISTGGLTLAAGLAVSTAAFAASPAPATPAAPAPAAPAGSDRITNPVAEFAGIDK CHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHH ITGRIITFDVYIDETVQFGALQVTPRVCYSRPQNEEPKTDSFVEVDEITLDRKIRRIFTG HCCEEEEEEEEECCCCCCCEEEECHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHH WMFAESPGLNAVEHAVYDVWLKECKQKSDVPAPDATKADAPKADASKPVATKPAAAKPAA HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SPDAEQPDPTQPDTSDAN CCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA