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The map label for this gene is alr [H]

Identifier: 134302328

GI number: 134302328

Start: 1345510

End: 1346607

Strand: Reverse

Name: alr [H]

Synonym: FTW_1439

Alternate gene names: 134302328

Gene position: 1346607-1345510 (Counterclockwise)

Preceding gene: 134302329

Following gene: 134302327

Centisome position: 70.93

GC content: 32.33

Gene sequence:

>1098_bases
ATGAATATTCTAAAGATTAGTAAACAAACTTTAAGGAATAATATTAAAATTATTCGAGAGTATATTGGCAACGCTAAGAT
GTGTTTTCCTGTCAAGGCAAATGCTTATGGGCATGGTATAGAAGACATAGTAGAAAATACACATGATTTAGTCGATTTCT
TTGCTGTTGCTAACTCTCTAGAGGCTTTTAGAGTAACAGCTGTTGCTAAAAATCCAGTGCTAGTATTTGGAGTAATATAC
TATGAATATATTGAAAAAATGATTTCAGAAAATATCAGAGTTAGCATTCAAGACTATGAAGATATTGAAAAGTTAGAGCA
AATAGCCAAAGAGCTTGATAAAAAAGTATATGCCCATATTAATATAAACACAGGTATGAATCGCATGGGCGTAGATTATA
ATGATGCCTGTAGAACTATACAGCGAGCTTATGAATCTGATTGGCTAATTTTAGAAGGAGTATATAGTCATCTAGCATGT
GCTGATAATAGAGATCATCCTACAAATATCAAACAAAAAAATAGATTTGATAGTATTGTCAAATTTACTAAAGGATTATC
TCAAGATATTATTTGTCATTTGTCTAATTCTTATGGTTTCTTGGGTCAAAAAGGAATCTGTTATGATATGGTAAGACCTG
GTATTTTAAGTTATGGTTTTTTACCAGAGTTTTACGTTGATAGAGTTATAAGAGAAATAAAGCCTATCGCAAGATTACTA
TCAAAAGTGGTTAAGATAATTACCTTGCAAGAGGGCGAAGGCGTTGGTTATTCATTGATATATAGAGGCTTTGAAGGTGA
GCAATTAGCTGTGATTCCTATTGGTTATGGCGATGGTTTTCCTCGTGAGTTAGGTGATAGAGGGTTCGTTAATATTAATG
ATGTCATGTATCCTATGGCTGGTAGAATGAGTATGGATAGTCTGACAGTATCGTTAGGAATTAATGAATACGATGTCAAA
GTAGGCGATACAGTAGAGCTAATATCAGCTATTCCACGCAATCGAAATAGTGCATTTTCAATAGCAAAACAAACAAATAC
TATCGAATATGATATTATGAGCACATTAAATGATCGTATTATAAGAAAGATCATATAA

Upstream 100 bases:

>100_bases
ATTTATGTGGATTACTATTGTTACTGTAGCTGCTGCTTTTTCACTTCTAGTCCTAAAAAATAAAATTAATAATGTTATTT
ATAAATAGTATGGGAAATTT

Downstream 100 bases:

>100_bases
TATTCTAAACTGTTTACTTAATGAATTAATCACAGTAAACTCATAATTATAGTTTATCAATTTGTTAATTAAAGGATAAC
ATGGAAAAAAAGTCTTTCTA

Product: alanine racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MNILKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHDLVDFFAVANSLEAFRVTAVAKNPVLVFGVIY
YEYIEKMISENIRVSIQDYEDIEKLEQIAKELDKKVYAHININTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLAC
ADNRDHPTNIKQKNRFDSIVKFTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLL
SKVVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDRGFVNINDVMYPMAGRMSMDSLTVSLGINEYDVK
VGDTVELISAIPRNRNSAFSIAKQTNTIEYDIMSTLNDRIIRKII

Sequences:

>Translated_365_residues
MNILKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHDLVDFFAVANSLEAFRVTAVAKNPVLVFGVIY
YEYIEKMISENIRVSIQDYEDIEKLEQIAKELDKKVYAHININTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLAC
ADNRDHPTNIKQKNRFDSIVKFTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLL
SKVVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDRGFVNINDVMYPMAGRMSMDSLTVSLGINEYDVK
VGDTVELISAIPRNRNSAFSIAKQTNTIEYDIMSTLNDRIIRKII
>Mature_365_residues
MNILKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHDLVDFFAVANSLEAFRVTAVAKNPVLVFGVIY
YEYIEKMISENIRVSIQDYEDIEKLEQIAKELDKKVYAHININTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLAC
ADNRDHPTNIKQKNRFDSIVKFTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLL
SKVVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDRGFVNINDVMYPMAGRMSMDSLTVSLGINEYDVK
VGDTVELISAIPRNRNSAFSIAKQTNTIEYDIMSTLNDRIIRKII

Specific function: Provides the D-alanine required for cell wall biosynthesis [H]

COG id: COG0787

COG function: function code M; Alanine racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alanine racemase family [H]

Homologues:

Organism=Escherichia coli, GI1790487, Length=375, Percent_Identity=28.8, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1787439, Length=357, Percent_Identity=28.0112044817927, Blast_Score=115, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000821
- InterPro:   IPR009006
- InterPro:   IPR011079
- InterPro:   IPR001608 [H]

Pfam domain/function: PF00842 Ala_racemase_C; PF01168 Ala_racemase_N [H]

EC number: =5.1.1.1 [H]

Molecular weight: Translated: 41463; Mature: 41463

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHDLVDFFAVANSL
CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCH
EAFRVTAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEDIEKLEQIAKELDKKVYAHI
HHEEEEEEECCCEEEHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHEEEEE
NINTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIV
EECCCCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
KFTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLL
HHHHCCCHHHEEEECCCCCCCCCCCCCHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHH
SKVVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDRGFVNINDVMYPMA
HHHHHHEEEECCCCCCEEEEEECCCCCEEEEEEEECCCCCCHHHCCCCCEEHHHHHHCCC
GRMSMDSLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEYDIMSTLNDRI
CCCCCCCEEEEECCCEEEEECCCHHHHHHHCCCCCCCCEEEHHCCCCCHHHHHHHHHHHH
IRKII
HHHCC
>Mature Secondary Structure
MNILKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHDLVDFFAVANSL
CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCH
EAFRVTAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEDIEKLEQIAKELDKKVYAHI
HHEEEEEEECCCEEEHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHEEEEE
NINTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIV
EECCCCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
KFTKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLL
HHHHCCCHHHEEEECCCCCCCCCCCCCHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHH
SKVVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDRGFVNINDVMYPMA
HHHHHHEEEECCCCCCEEEEEECCCCCEEEEEEEECCCCCCHHHCCCCCEEHHHHHHCCC
GRMSMDSLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEYDIMSTLNDRI
CCCCCCCEEEEECCCEEEEECCCHHHHHHHCCCCCCCCEEEHHCCCCCHHHHHHHHHHHH
IRKII
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA