Click here to switch to the map view.

The map label for this gene is 134302159

Identifier: 134302159

GI number: 134302159

Start: 1147827

End: 1148258

Strand: Reverse

Name: 134302159

Synonym: FTW_1215

Alternate gene names: NA

Gene position: 1148258-1147827 (Counterclockwise)

Preceding gene: 134302160

Following gene: 134302158

Centisome position: 60.48

GC content: 29.4

Gene sequence:

>432_bases
GTGCAAGGAACAGTAAAGTTTTATAATAAAGATAAAGGTTATGGATTTATTTATTCAGAAGAGTCGGAAAAAGATTTTTT
CTTTAGTATAAATGATTGGAAAAACCCTACTGTACCAAATGGTAGTGATGATGTTGAGTTTGAGGTTGCACAGTCTAAAA
AGGGTGAAAAAGCTATAAATATTAAGCTTTTAAAATCAGCAGAGGATAAAAAACAACAGCAATTTAATAGTAATGATAGT
CGTATAACTTGCCCTAGTTGCAGTAGAAAGATTGTCCCGAGAATGATTACCTATAAAGGAGAACCTGAAAAGAGTGTATG
CCCATATTGTGCAGCACTTATTAAAAGTTTTGATAATTTTACAATACTTCCTTTTTTAACTATAGGAATAATAGTAATAA
TAATTTTAATATTTGTATTTGGTGGAAAATAG

Upstream 100 bases:

>100_bases
GAATTTAAAGGCATTAAAAGCCAGTATTTTAGATAAGGCATTTCGTGGGGAGTTGTAAAGCTTTTGTAAATTTCTAAGTT
AGTAAAAGGAGGAATGATAA

Downstream 100 bases:

>100_bases
ATCTATGCAGTCAAAGATAAATAGAATAACGGATATATTAAGAAGAGATGATGGAATCAGTGGGGCGATGCACTATACTG
AGCAAGTCAGCTGGATTCTT

Product: cold shock DNA -binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MQGTVKFYNKDKGYGFIYSEESEKDFFFSINDWKNPTVPNGSDDVEFEVAQSKKGEKAINIKLLKSAEDKKQQQFNSNDS
RITCPSCSRKIVPRMITYKGEPEKSVCPYCAALIKSFDNFTILPFLTIGIIVIIILIFVFGGK

Sequences:

>Translated_143_residues
MQGTVKFYNKDKGYGFIYSEESEKDFFFSINDWKNPTVPNGSDDVEFEVAQSKKGEKAINIKLLKSAEDKKQQQFNSNDS
RITCPSCSRKIVPRMITYKGEPEKSVCPYCAALIKSFDNFTILPFLTIGIIVIIILIFVFGGK
>Mature_143_residues
MQGTVKFYNKDKGYGFIYSEESEKDFFFSINDWKNPTVPNGSDDVEFEVAQSKKGEKAINIKLLKSAEDKKQQQFNSNDS
RITCPSCSRKIVPRMITYKGEPEKSVCPYCAALIKSFDNFTILPFLTIGIIVIIILIFVFGGK

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16228; Mature: 16228

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGTVKFYNKDKGYGFIYSEESEKDFFFSINDWKNPTVPNGSDDVEFEVAQSKKGEKAIN
CCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCEEE
IKLLKSAEDKKQQQFNSNDSRITCPSCSRKIVPRMITYKGEPEKSVCPYCAALIKSFDNF
EEEECCCHHHHHHHCCCCCCEEECCCCCHHHHHHHEEECCCCCCCHHHHHHHHHHHCCCC
TILPFLTIGIIVIIILIFVFGGK
EEHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQGTVKFYNKDKGYGFIYSEESEKDFFFSINDWKNPTVPNGSDDVEFEVAQSKKGEKAIN
CCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCEEE
IKLLKSAEDKKQQQFNSNDSRITCPSCSRKIVPRMITYKGEPEKSVCPYCAALIKSFDNF
EEEECCCHHHHHHHCCCCCCEEECCCCCHHHHHHHEEECCCCCCCHHHHHHHHHHHCCCC
TILPFLTIGIIVIIILIFVFGGK
EEHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA