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The map label for this gene is secD [H]

Identifier: 134302105

GI number: 134302105

Start: 1085675

End: 1087612

Strand: Reverse

Name: secD [H]

Synonym: FTW_1147

Alternate gene names: 134302105

Gene position: 1087612-1085675 (Counterclockwise)

Preceding gene: 134302106

Following gene: 134302104

Centisome position: 57.29

GC content: 35.14

Gene sequence:

>1938_bases
ATGAGTAACAACAGAAGTTTACCTATAAATCAGTTTCCGCTGTGGAAAAATCTTTTGATCGTAATTATCTTAGCATTAGC
AATTTTTTATGCTTTGCCTAATGTTTTTGGTAAGAGCCCAGCTTTGCAAATATCACAAAAAGATGGTGATGTGACTACAC
AGTTATTAGTAAGTGTAGAGAACACGCTAGCTAAAGATAAAATTAGTTATCAAAAAGCTGATATAGCTGATGACAAAAGT
AATATTGCAATAACTTTCAAGGATGTCGAAGAGCAGCTAAAAGCTAAAAAAGTACTAAAAGACAGTTTGAGCGATGACTA
TATTATTGCGATGAATATGCTCTCGAACTCACCAAATTGGTTATCAGCATTAGGTGCTAACCCTATGAATTTGGGACTAG
ATTTGCGTGGTGGGATGTACTTGATGTTAGAAGCTGATACAAAAACATCTATTGATGCTCAACTAGATAATTACTTGAGC
ATAATTCTAAGTGCTGCTAAGGATAATAGTATAAATATATCAAGCTCAACAAAAGCTGAAGAAAAATCAACTATCAAAGC
ACCACAAAATTATTTTGACAATGGTTTTGTTTCGATAACTTTAGCAAATTCTGTTGATGTTGATAAGCTTAAACAATATT
TAAGTACTGATTTCATCAAGACACAAGACCCTAATATAATTTACACAAACAAGGGTAATACTGTATTTATTTCTTATAAT
AGTGCTAAGATTCTTCAGCTTAAGCAAGATGCGATATCGCAGGTTGTGACAGTTATGCGTAATCGTATCAACGCATTAGG
TGTAGCTGAAGCATCTGTTGCTCAGGCAGGTGATAATCGTGTAGTGATTGAAATACCAGGCTTACAAGATGCTACCCAAG
CTAAGCAAATTTTAGGTGGTACTTCTACAGCAAGTTTCTATTTAGTAAATACAGTTGCAGATAGATTAGCAGCTGAAGAG
CAAGGTTATAAAGTTTATTCTCTAGATAATGGTCGAGGCTATCAAAGCTACTATAGCTTAAAAGGAACTGCTGTTGCTGG
TGGTGCTGATATTATCGGAGCTAGCCCATCTATAGATCGTCAGACTGGAACACCTATAGTCATGGTTGAGCTAGATAGAA
GTGCAGCAAGCCATTTTAGACAAATAACTGGTAAGAATATTGGTAACCCAATGGGTGTAATGCTTGTTAATACCACTTAC
GAGAAAGTCAAAGATAAAGATGGTAAAGAGAAAAATGTAGTTAGCAAAACAGAAAAATTAATCAATGTTGCTACAATCCA
ATCTGCGTTAGGCTCACAATTTCAGATCACTGGTCTAAATCAAAAAGAAGCAAATAATCTAGCTTTAATGATCAAATCAG
GAGCGTTGCAGGTACCTGTACATATCGTCCAAGAGCAGCAAATAGGTCCAAGCTTAGGTAAGGATAATATTGGAAAAGGT
ATGCTCTCTATCGTGATAGCACTTATAGCTGTTGTAGTATTTATCTTAGTTTATTATCGTGTTTTCGGGATTATAGCTAA
CATTGCGCTAGTGATGAACTTAATCTTAATTGTAGCGGTGATGTCTATTATCCCTGGAGCTACTCTGACATTACCAGGTA
TTGCTGGTATCGTCTTAAATTTAGGTATGTCGATAGATGGTAACGTGCTAATATTTGAACGTATTAGAGAAGAAATTCGT
GCTGGTATGCCTCGTCAAAGTGCAATACATATTGGTTATGAGAAAGCATTTACTACAATTGTAGATTCAAATATTACAAC
CTTGATTGTTGCGGTGATACTTTTCTTTATCGGTAGTGGCGCAGTCAAAGGTTTTGCAATCACATTAATGATAGGTATTG
TCACATCTATGTTTACATCTGTTACTGTTTCAAGAGCGATGACAAATTTTGTTTACAGTAAGAGAAAGAAACTAGAAAAA
ATCTCTATAGGCATATAA

Upstream 100 bases:

>100_bases
ATGCTGTAGCAAATATTTTACCTAAAGGTGCTACTAAAGCTTAATTAGCTATTCTACGAAATCTTTTTAATTTTTTTCTT
TTTATTTAAAGGAATTTTCA

Downstream 100 bases:

>100_bases
TTTTAGGTTGGGTTTATAATGGAATTTTTTAAACAAAAGACAAGCATAGATTTTTTAGGAATTAAGAAATATACAACTGT
TTTTTCTGTATTAATGATTG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 645; Mature: 644

Protein sequence:

>645_residues
MSNNRSLPINQFPLWKNLLIVIILALAIFYALPNVFGKSPALQISQKDGDVTTQLLVSVENTLAKDKISYQKADIADDKS
NIAITFKDVEEQLKAKKVLKDSLSDDYIIAMNMLSNSPNWLSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNYLS
IILSAAKDNSINISSSTKAEEKSTIKAPQNYFDNGFVSITLANSVDVDKLKQYLSTDFIKTQDPNIIYTNKGNTVFISYN
SAKILQLKQDAISQVVTVMRNRINALGVAEASVAQAGDNRVVIEIPGLQDATQAKQILGGTSTASFYLVNTVADRLAAEE
QGYKVYSLDNGRGYQSYYSLKGTAVAGGADIIGASPSIDRQTGTPIVMVELDRSAASHFRQITGKNIGNPMGVMLVNTTY
EKVKDKDGKEKNVVSKTEKLINVATIQSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIGKG
MLSIVIALIAVVVFILVYYRVFGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIR
AGMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYSKRKKLEK
ISIGI

Sequences:

>Translated_645_residues
MSNNRSLPINQFPLWKNLLIVIILALAIFYALPNVFGKSPALQISQKDGDVTTQLLVSVENTLAKDKISYQKADIADDKS
NIAITFKDVEEQLKAKKVLKDSLSDDYIIAMNMLSNSPNWLSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNYLS
IILSAAKDNSINISSSTKAEEKSTIKAPQNYFDNGFVSITLANSVDVDKLKQYLSTDFIKTQDPNIIYTNKGNTVFISYN
SAKILQLKQDAISQVVTVMRNRINALGVAEASVAQAGDNRVVIEIPGLQDATQAKQILGGTSTASFYLVNTVADRLAAEE
QGYKVYSLDNGRGYQSYYSLKGTAVAGGADIIGASPSIDRQTGTPIVMVELDRSAASHFRQITGKNIGNPMGVMLVNTTY
EKVKDKDGKEKNVVSKTEKLINVATIQSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIGKG
MLSIVIALIAVVVFILVYYRVFGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIR
AGMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYSKRKKLEK
ISIGI
>Mature_644_residues
SNNRSLPINQFPLWKNLLIVIILALAIFYALPNVFGKSPALQISQKDGDVTTQLLVSVENTLAKDKISYQKADIADDKSN
IAITFKDVEEQLKAKKVLKDSLSDDYIIAMNMLSNSPNWLSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNYLSI
ILSAAKDNSINISSSTKAEEKSTIKAPQNYFDNGFVSITLANSVDVDKLKQYLSTDFIKTQDPNIIYTNKGNTVFISYNS
AKILQLKQDAISQVVTVMRNRINALGVAEASVAQAGDNRVVIEIPGLQDATQAKQILGGTSTASFYLVNTVADRLAAEEQ
GYKVYSLDNGRGYQSYYSLKGTAVAGGADIIGASPSIDRQTGTPIVMVELDRSAASHFRQITGKNIGNPMGVMLVNTTYE
KVKDKDGKEKNVVSKTEKLINVATIQSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIGKGM
LSIVIALIAVVVFILVYYRVFGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIRA
GMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYSKRKKLEKI
SIGI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=639, Percent_Identity=38.3411580594679, Blast_Score=445, Evalue=1e-126,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 69788; Mature: 69657

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNNRSLPINQFPLWKNLLIVIILALAIFYALPNVFGKSPALQISQKDGDVTTQLLVSVE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH
NTLAKDKISYQKADIADDKSNIAITFKDVEEQLKAKKVLKDSLSDDYIIAMNMLSNSPNW
HHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCH
LSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNYLSIILSAAKDNSINISSSTKAE
HHHHCCCCCEECEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCH
EKSTIKAPQNYFDNGFVSITLANSVDVDKLKQYLSTDFIKTQDPNIIYTNKGNTVFISYN
HHHHHCCCHHHCCCCEEEEEEECCCCHHHHHHHHHHCCEECCCCCEEEECCCCEEEEEEC
SAKILQLKQDAISQVVTVMRNRINALGVAEASVAQAGDNRVVIEIPGLQDATQAKQILGG
CCEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHCC
TSTASFYLVNTVADRLAAEEQGYKVYSLDNGRGYQSYYSLKGTAVAGGADIIGASPSIDR
CCCHHEEHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCEEEECCCCEECCCCCCCC
QTGTPIVMVELDRSAASHFRQITGKNIGNPMGVMLVNTTYEKVKDKDGKEKNVVSKTEKL
CCCCCEEEEEECHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHCCCCCHHHHHHHHHHH
INVATIQSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIGKG
HHHHHHHHHHCCEEEEECCCCCCCCCEEEEEECCCEECCHHHHHHHHCCCCCCCCCCCHH
MLSIVIALIAVVVFILVYYRVFGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHH
LGMSIDGNVLIFERIREEIRAGMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSG
CCCCCCCCEEEHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCC
AVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYSKRKKLEKISIGI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SNNRSLPINQFPLWKNLLIVIILALAIFYALPNVFGKSPALQISQKDGDVTTQLLVSVE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH
NTLAKDKISYQKADIADDKSNIAITFKDVEEQLKAKKVLKDSLSDDYIIAMNMLSNSPNW
HHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCH
LSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNYLSIILSAAKDNSINISSSTKAE
HHHHCCCCCEECEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCH
EKSTIKAPQNYFDNGFVSITLANSVDVDKLKQYLSTDFIKTQDPNIIYTNKGNTVFISYN
HHHHHCCCHHHCCCCEEEEEEECCCCHHHHHHHHHHCCEECCCCCEEEECCCCEEEEEEC
SAKILQLKQDAISQVVTVMRNRINALGVAEASVAQAGDNRVVIEIPGLQDATQAKQILGG
CCEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHCC
TSTASFYLVNTVADRLAAEEQGYKVYSLDNGRGYQSYYSLKGTAVAGGADIIGASPSIDR
CCCHHEEHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCEEEECCCCEECCCCCCCC
QTGTPIVMVELDRSAASHFRQITGKNIGNPMGVMLVNTTYEKVKDKDGKEKNVVSKTEKL
CCCCCEEEEEECHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHCCCCCHHHHHHHHHHH
INVATIQSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIGKG
HHHHHHHHHHCCEEEEECCCCCCCCCEEEEEECCCEECCHHHHHHHHCCCCCCCCCCCHH
MLSIVIALIAVVVFILVYYRVFGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHH
LGMSIDGNVLIFERIREEIRAGMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSG
CCCCCCCCEEEHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCC
AVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYSKRKKLEKISIGI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]