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The map label for this gene is ybeY [C]

Identifier: 134302076

GI number: 134302076

Start: 1053977

End: 1054465

Strand: Direct

Name: ybeY [C]

Synonym: FTW_1112

Alternate gene names: 134302076

Gene position: 1053977-1054465 (Clockwise)

Preceding gene: 134302075

Following gene: 134302077

Centisome position: 55.52

GC content: 33.95

Gene sequence:

>489_bases
ATGGATAATCTAAATATAAATTTCATCAATGATGACGAACACCCCATACCTAGTCAAGATTTACTGCTAAAATGCCTACA
ACTTGTAGCTGACAAACATCATATCAGTCATGCTGAAGTTAATCTAAATATTGTCTCGAATGATGAAATTCAACAAATAA
ATAAACAGTTCCGCAATAAAGATAAACCAACAAATATCATTTCCTTTAAATTTGAAAAGCCTCAAGGCTTACCTGATGAT
ATTGCTAATGATTTCTTAGGTGATATTGTAATAGCGCCAGCGGTATTAGAGAATGAAGCCAAAGAGCAGAACAAAGAGCT
CAATGACCACTGGCAACATATTTTTATCCACGGTTTGTTACACTTGCTTGGTTATAATCACCAAGATGATCAAGAAGCTG
AAGTGATGGAGAATTTAGAAATACAACTACTAGCACAGCTAGGAATAGCTAATCCATATATTGAACAAGAGAATCAAAAT
GGCAGATAA

Upstream 100 bases:

>100_bases
GGTGTAGCTATTAGCTACCTGAAATCAGTTGATATTGTCCGCCATCAAATAGTTCAAAAAATAGTTAATGCTTATGATAA
GCATGAAGAGAAAACTAAAA

Downstream 100 bases:

>100_bases
TAATCCTTTTATAAAAAGACTTACCTCAAGCATTTTTAATATAAAAAGTGAAGAAGCTCTTATCGATGCTATCAATAGAG
CTGCTGCTAATGAGGTTATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MDNLNINFINDDEHPIPSQDLLLKCLQLVADKHHISHAEVNLNIVSNDEIQQINKQFRNKDKPTNIISFKFEKPQGLPDD
IANDFLGDIVIAPAVLENEAKEQNKELNDHWQHIFIHGLLHLLGYNHQDDQEAEVMENLEIQLLAQLGIANPYIEQENQN
GR

Sequences:

>Translated_162_residues
MDNLNINFINDDEHPIPSQDLLLKCLQLVADKHHISHAEVNLNIVSNDEIQQINKQFRNKDKPTNIISFKFEKPQGLPDD
IANDFLGDIVIAPAVLENEAKEQNKELNDHWQHIFIHGLLHLLGYNHQDDQEAEVMENLEIQLLAQLGIANPYIEQENQN
GR
>Mature_162_residues
MDNLNINFINDDEHPIPSQDLLLKCLQLVADKHHISHAEVNLNIVSNDEIQQINKQFRNKDKPTNIISFKFEKPQGLPDD
IANDFLGDIVIAPAVLENEAKEQNKELNDHWQHIFIHGLLHLLGYNHQDDQEAEVMENLEIQLLAQLGIANPYIEQENQN
GR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=120, Percent_Identity=46.6666666666667, Blast_Score=105, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 18640; Mature: 18640

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNLNINFINDDEHPIPSQDLLLKCLQLVADKHHISHAEVNLNIVSNDEIQQINKQFRNK
CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHCCC
DKPTNIISFKFEKPQGLPDDIANDFLGDIVIAPAVLENEAKEQNKELNDHWQHIFIHGLL
CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLLGYNHQDDQEAEVMENLEIQLLAQLGIANPYIEQENQNGR
HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDNLNINFINDDEHPIPSQDLLLKCLQLVADKHHISHAEVNLNIVSNDEIQQINKQFRNK
CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHCCC
DKPTNIISFKFEKPQGLPDDIANDFLGDIVIAPAVLENEAKEQNKELNDHWQHIFIHGLL
CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLLGYNHQDDQEAEVMENLEIQLLAQLGIANPYIEQENQNGR
HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA