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The map label for this gene is rarA [H]

Identifier: 134301521

GI number: 134301521

Start: 439807

End: 440709

Strand: Reverse

Name: rarA [H]

Synonym: FTW_0447

Alternate gene names: 134301521

Gene position: 440709-439807 (Counterclockwise)

Preceding gene: 134301522

Following gene: 134301520

Centisome position: 23.21

GC content: 35.66

Gene sequence:

>903_bases
TTGCCATATGTTGAGTCAGGTAAAATTATTTTAATTGGTGCTACTACTGAGAATCCAACATATTACTTGAACGATGCTTT
AGTTTCGCGATTGTTTATTTTGCGTCTTAAAAGATTAAGTTTAGTAGCTACTCAAAAACTTATCGAAAAAGCATTATCAC
AAGATGAAGTGCTAGCGAAACATAAATTCAAAATTGATGATGGCTTATATAATGCTATGCATAATTATAATGAAGGAGAT
TGTTGCAAAATCCTCAATCTGCTTGAGAGAATGTTTTTAATTAGTACTAGAGGCGATGAAATTTATCTAAACAAAGAGCT
TTTTGATCAAGCTGTTGGAGAGACTTTGCGAGATTTTCATCGTGAGGGGAAGGATTTTTATGAGCAGTTATCAGCTTTTC
ACAAGTCGGTACGCGGGACAGATCCTGATGCGGCAATCTTTTGGTTAAGTGTGATGTTAGATAATGGGGTTGATCCATTA
GTTATTGCTAGAAGAATGCTATGTATTGCCTCAGAGGATATTGGTAATGCTGATCCACAAGCACTAAGAGTAGCTATGGA
TGCTTGGAATGCTTATGAAAAATTAGGCATGCCAGAGGGGAGGCTAGTATTAGCACAAGCAGCTATTTATCTAGCAGTAG
CGCCAAAGAGTAATGCTTGTTATAAAGCGTTGGCACAAGCTCAGCAGCTCGTTAAAAGCTTAGGTAATATCGATGTTCCA
CAGCACCTTAAGAATTATAAGGATAGTAATTATCTTTATCCACATAACTATCCAAACTCATATGTTATCCAGCAATATCT
TCCAGATAATATCATACAAAATTTTTATCAGCCTACAGCAAGTGGTTTTGAAGCAAAGATAAAAACCAAGCTTGACAGTA
TAAACAAAATCAAGAAGTTGTAA

Upstream 100 bases:

>100_bases
GGATATCAAAAAGTTAATTACAGATAATCAGCATCTAGATAGTTTTGTATTATTTTTAGATGAGATTCATCGCTTTAATA
AATCTCAACAAGATATACTT

Downstream 100 bases:

>100_bases
AATTAAGTTATTAAATTTTTGTATTTGTATGTTATAATCTTTGGAATTAAATTATATCTATAAAATATAACTAGGTTTTA
AACTGCTATGGCATTAGAAA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MPYVESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGD
CCKILNLLERMFLISTRGDEIYLNKELFDQAVGETLRDFHREGKDFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPL
VIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACYKALAQAQQLVKSLGNIDVP
QHLKNYKDSNYLYPHNYPNSYVIQQYLPDNIIQNFYQPTASGFEAKIKTKLDSINKIKKL

Sequences:

>Translated_300_residues
MPYVESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGD
CCKILNLLERMFLISTRGDEIYLNKELFDQAVGETLRDFHREGKDFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPL
VIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACYKALAQAQQLVKSLGNIDVP
QHLKNYKDSNYLYPHNYPNSYVIQQYLPDNIIQNFYQPTASGFEAKIKTKLDSINKIKKL
>Mature_299_residues
PYVESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDC
CKILNLLERMFLISTRGDEIYLNKELFDQAVGETLRDFHREGKDFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLV
IARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACYKALAQAQQLVKSLGNIDVPQ
HLKNYKDSNYLYPHNYPNSYVIQQYLPDNIIQNFYQPTASGFEAKIKTKLDSINKIKKL

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=313, Percent_Identity=32.9073482428115, Blast_Score=149, Evalue=2e-36,
Organism=Homo sapiens, GI18426904, Length=296, Percent_Identity=30.4054054054054, Blast_Score=118, Evalue=5e-27,
Organism=Escherichia coli, GI1787119, Length=305, Percent_Identity=39.344262295082, Blast_Score=209, Evalue=1e-55,
Organism=Saccharomyces cerevisiae, GI6324111, Length=300, Percent_Identity=34.6666666666667, Blast_Score=160, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 34034; Mature: 33902

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYVESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAK
CCCCCCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
HKFKIDDGLYNAMHNYNEGDCCKILNLLERMFLISTRGDEIYLNKELFDQAVGETLRDFH
HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHH
REGKDFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQ
HCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHH
ALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACYKALAQAQQLVKSLGNIDVP
HHHHHHHHHHHHHHCCCCCCHHHHEEHEEHEEECCCCCHHHHHHHHHHHHHHHHCCCCCH
QHLKNYKDSNYLYPHNYPNSYVIQQYLPDNIIQNFYQPTASGFEAKIKTKLDSINKIKKL
HHHHCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PYVESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAK
CCCCCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH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PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]