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The map label for this gene is ycfH [C]

Identifier: 134301518

GI number: 134301518

Start: 435227

End: 435994

Strand: Reverse

Name: ycfH [C]

Synonym: FTW_0442

Alternate gene names: 134301518

Gene position: 435994-435227 (Counterclockwise)

Preceding gene: 134301520

Following gene: 134301517

Centisome position: 22.97

GC content: 33.33

Gene sequence:

>768_bases
ATGATAATAGATTCACATTGTCACCTTAATTATCTGAAGCTTGAGGATATAACTCTAGAGCAGGTTATTAATAATGCAAA
AAAAGCTGATATTGATAAAATTGTTTCAATAGCTGTAGCATGGCATGAAATTGAAGATATACAAAAAATAGCTGAAGATT
ATAGTGATGTTTATTTTTCTGTAGGGGTTCATCCTAGCGAATTAGATACTCATCAACCAAGTGTTGATGAGATTATAGTA
AGATCACAACACCAAAAATGTGTTGCTATTGGTGAGACAGGTTTAGACTATTACTATAATTCTAGTGATACTAAAAAAGC
TCAGATAGATAAATTTGCTAAGCATATCCAAGCAGCTAATCAAGTAAATAAGCCTGTAGTTGTACATACTCGCGCAGCAA
AACAAGATACTCTAGATATCTTAAAGGCAGAAAATGTAGAGAAATGTGGCGGAATACTACATTGTTTCACAGAAGATTAC
GATATGGCAAAAAAAGCTCTAGATATGGGTATGTATATATCATTTTCTGGAATTTTGACTTTTAAAAATGCTAAAGATAT
TCAAGAAACAGCGAAGAAACTACCCCTTGATAGAATTTTGATTGAAACAGATGCTCCATATCTAACGCCAGTACCGTTGC
GTGGTAAACCAAACTACCCAGAGTATGTCAAATATATCGCGCAGTTTTTGGCTGATTTAAAAGGCGTATCCTACCAGCAA
GTCGCAACACAGACTTATCAAAATACTTGTGAAATTTTCAAATTTTAA

Upstream 100 bases:

>100_bases
ATTAAAGAAAAAGCTTAGTTGTCTATTTAAGAGCTTTGCAAATAGTTTTTATACTATGAATAATTTATAATACTTACAGA
TACAATATATTTGCTAAATT

Downstream 100 bases:

>100_bases
GAATAGGCTCTTAAGTAAAATAGATTTTGTGCTAATATCTAGTTGCTAGCAATTTTTTAGTGATTTTACCAAGCTCTGAT
GATTGTTAGTACAGCGCGAT

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MIIDSHCHLNYLKLEDITLEQVINNAKKADIDKIVSIAVAWHEIEDIQKIAEDYSDVYFSVGVHPSELDTHQPSVDEIIV
RSQHQKCVAIGETGLDYYYNSSDTKKAQIDKFAKHIQAANQVNKPVVVHTRAAKQDTLDILKAENVEKCGGILHCFTEDY
DMAKKALDMGMYISFSGILTFKNAKDIQETAKKLPLDRILIETDAPYLTPVPLRGKPNYPEYVKYIAQFLADLKGVSYQQ
VATQTYQNTCEIFKF

Sequences:

>Translated_255_residues
MIIDSHCHLNYLKLEDITLEQVINNAKKADIDKIVSIAVAWHEIEDIQKIAEDYSDVYFSVGVHPSELDTHQPSVDEIIV
RSQHQKCVAIGETGLDYYYNSSDTKKAQIDKFAKHIQAANQVNKPVVVHTRAAKQDTLDILKAENVEKCGGILHCFTEDY
DMAKKALDMGMYISFSGILTFKNAKDIQETAKKLPLDRILIETDAPYLTPVPLRGKPNYPEYVKYIAQFLADLKGVSYQQ
VATQTYQNTCEIFKF
>Mature_255_residues
MIIDSHCHLNYLKLEDITLEQVINNAKKADIDKIVSIAVAWHEIEDIQKIAEDYSDVYFSVGVHPSELDTHQPSVDEIIV
RSQHQKCVAIGETGLDYYYNSSDTKKAQIDKFAKHIQAANQVNKPVVVHTRAAKQDTLDILKAENVEKCGGILHCFTEDY
DMAKKALDMGMYISFSGILTFKNAKDIQETAKKLPLDRILIETDAPYLTPVPLRGKPNYPEYVKYIAQFLADLKGVSYQQ
VATQTYQNTCEIFKF

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=270, Percent_Identity=30.3703703703704, Blast_Score=108, Evalue=4e-24,
Organism=Homo sapiens, GI226061853, Length=276, Percent_Identity=30.7971014492754, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI110349734, Length=270, Percent_Identity=30, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI226061614, Length=256, Percent_Identity=30.46875, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI225903424, Length=227, Percent_Identity=29.5154185022026, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI226061595, Length=233, Percent_Identity=31.3304721030043, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI14042943, Length=265, Percent_Identity=25.6603773584906, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI225903439, Length=239, Percent_Identity=26.3598326359833, Blast_Score=85, Evalue=5e-17,
Organism=Escherichia coli, GI1787342, Length=256, Percent_Identity=44.140625, Blast_Score=228, Evalue=4e-61,
Organism=Escherichia coli, GI48994985, Length=238, Percent_Identity=30.672268907563, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI87082439, Length=255, Percent_Identity=26.2745098039216, Blast_Score=113, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17559024, Length=266, Percent_Identity=28.5714285714286, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71980746, Length=266, Percent_Identity=27.4436090225564, Blast_Score=90, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17543026, Length=298, Percent_Identity=25.503355704698, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17565396, Length=222, Percent_Identity=29.2792792792793, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24648690, Length=221, Percent_Identity=33.9366515837104, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI221330018, Length=269, Percent_Identity=26.7657992565056, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24586117, Length=269, Percent_Identity=26.7657992565056, Blast_Score=93, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28936; Mature: 28936

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIDSHCHLNYLKLEDITLEQVINNAKKADIDKIVSIAVAWHEIEDIQKIAEDYSDVYFS
CEECCCCCEEEEEECCCCHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
VGVHPSELDTHQPSVDEIIVRSQHQKCVAIGETGLDYYYNSSDTKKAQIDKFAKHIQAAN
CCCCHHHCCCCCCCHHHHHHHCCCCCEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHH
QVNKPVVVHTRAAKQDTLDILKAENVEKCGGILHCFTEDYDMAKKALDMGMYISFSGILT
HCCCCEEEEECCCCHHHHHHHHHCCHHHHCCEEEEHHCCHHHHHHHHHCCEEEEEEEEEE
FKNAKDIQETAKKLPLDRILIETDAPYLTPVPLRGKPNYPEYVKYIAQFLADLKGVSYQQ
ECCHHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH
VATQTYQNTCEIFKF
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MIIDSHCHLNYLKLEDITLEQVINNAKKADIDKIVSIAVAWHEIEDIQKIAEDYSDVYFS
CEECCCCCEEEEEECCCCHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
VGVHPSELDTHQPSVDEIIVRSQHQKCVAIGETGLDYYYNSSDTKKAQIDKFAKHIQAAN
CCCCHHHCCCCCCCHHHHHHHCCCCCEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHH
QVNKPVVVHTRAAKQDTLDILKAENVEKCGGILHCFTEDYDMAKKALDMGMYISFSGILT
HCCCCEEEEECCCCHHHHHHHHHCCHHHHCCEEEEHHCCHHHHHHHHHCCEEEEEEEEEE
FKNAKDIQETAKKLPLDRILIETDAPYLTPVPLRGKPNYPEYVKYIAQFLADLKGVSYQQ
ECCHHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH
VATQTYQNTCEIFKF
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]