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The map label for this gene is deoB [H]

Identifier: 134301324

GI number: 134301324

Start: 206454

End: 207698

Strand: Direct

Name: deoB [H]

Synonym: FTW_0198

Alternate gene names: 134301324

Gene position: 206454-207698 (Clockwise)

Preceding gene: 134301323

Following gene: 134301325

Centisome position: 10.87

GC content: 36.79

Gene sequence:

>1245_bases
ATGTTAAAAGATAAAAAAGTTGTTATCTTACTCTTTGATTCATTTGGTATTGGTCAAGCTCCTGATGCAGCCGATTTTGG
CGATGAAGGTGCTGATACTCTAGGTCACACTGTTGATTATTTTACTAACAATGGCATGAGCATTTCGCTGCCAAATTTAT
CAAAGAAGGGCCTTAAGAAAGCTGCGGAATATAATAGATGTAAAGAATTTAGTCAAGATATTGCACAATCTGAGCAGGTT
GAAAATGCAAAATATGGTTATTGCGCTGAAGTAAGTAAAGGTAAGGATACTCCAAGTGGTCATTGGGAACTTGCTGGAGT
GCCAGTTATGTTTGATTGGTATTACTTTACAAAGAAACAACACCAAAGCTGTTTTGATAAAGAATTTATTGATAAGTGGG
TTGAGAGAGCAGGTATTACAGAGGGTTTTATCGATGCAGGACATGCTTCTGGTACTGAGGTTCTAAAAGAGCATGGCTGT
GAAAGTTGTGTTACCAAAAAACCAATTATTTACACATCTGCTGATAGTGTTTTTCAGGTTGCTGCACATGAAGATTATTA
TGGTTTAGATAAGCTTTTGAAGATTTGCCTAGTAGCTAGAGAAGTCCTCGATGAAATGGGTATGAAAGTTGGTAGAGTTA
TCGCTCGTCCATTTATTGGTGAATCAGCCGATGAGTATGTGCGTACTGGTAATCGTAGAGATTTCTCAATCCTACCTCCA
GCACCAACCTTGTTAGATAAGTTGGTTAAAGCAGGTGGGGAAGTTGTCTCAATCGGTAAGATTGCTGATATTTATGCAAA
TCAAGGTATTACTAAGAAAGTTAAGGCAACAGGATTAGAAGAGTTGTTTGATAAGACTATAGATGAATATACTTTAGCAA
AACAAAATACATTGGTATTTACAAATTTTGTTGATTTAGACTCAAGTTTTGGTCATCGTAGAGATCCAAAAGGCTATGGA
AAAGCTTTAGAATATTTAGACTCAAGAATACCTGACTTAGATGCCAAACTAGATGATAATACTATTGTTGTGTTAGCAGC
TGATCATGGTTGTGATCCAACTGCTCCAGGTTCAGATCATACTAGAGAGTGTGTGCCATTTTTACTTTGGGGTAGAAATA
TTAAGCCAGAATTTATCGGAGCAAGAGATACTTTTGCAGATATTGGGCAAACTATAGCTGACTTTATGGGTATTGAATCT
CTAGAGTATGGTAAATCAATCTTTGGGGCTAGCCATGATAACTAA

Upstream 100 bases:

>100_bases
TTTAAAGAAGAAGATATATTTAATGAGATTTCTCCTGATTTGATATTGCGTGGAATTAGAATTGCATTTTTAGAAAATAA
CAAGAAAGGGGTTTAGGAGT

Downstream 100 bases:

>100_bases
GCAAGAGATAGTATCCTTGATAGATTTAACACAACTTGGAGATAGTGATACACAAGTAGATATCGTTAATCTTTGTTCTA
AAGCGAGAAATTCTCTCGGT

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MLKDKKVVILLFDSFGIGQAPDAADFGDEGADTLGHTVDYFTNNGMSISLPNLSKKGLKKAAEYNRCKEFSQDIAQSEQV
ENAKYGYCAEVSKGKDTPSGHWELAGVPVMFDWYYFTKKQHQSCFDKEFIDKWVERAGITEGFIDAGHASGTEVLKEHGC
ESCVTKKPIIYTSADSVFQVAAHEDYYGLDKLLKICLVAREVLDEMGMKVGRVIARPFIGESADEYVRTGNRRDFSILPP
APTLLDKLVKAGGEVVSIGKIADIYANQGITKKVKATGLEELFDKTIDEYTLAKQNTLVFTNFVDLDSSFGHRRDPKGYG
KALEYLDSRIPDLDAKLDDNTIVVLAADHGCDPTAPGSDHTRECVPFLLWGRNIKPEFIGARDTFADIGQTIADFMGIES
LEYGKSIFGASHDN

Sequences:

>Translated_414_residues
MLKDKKVVILLFDSFGIGQAPDAADFGDEGADTLGHTVDYFTNNGMSISLPNLSKKGLKKAAEYNRCKEFSQDIAQSEQV
ENAKYGYCAEVSKGKDTPSGHWELAGVPVMFDWYYFTKKQHQSCFDKEFIDKWVERAGITEGFIDAGHASGTEVLKEHGC
ESCVTKKPIIYTSADSVFQVAAHEDYYGLDKLLKICLVAREVLDEMGMKVGRVIARPFIGESADEYVRTGNRRDFSILPP
APTLLDKLVKAGGEVVSIGKIADIYANQGITKKVKATGLEELFDKTIDEYTLAKQNTLVFTNFVDLDSSFGHRRDPKGYG
KALEYLDSRIPDLDAKLDDNTIVVLAADHGCDPTAPGSDHTRECVPFLLWGRNIKPEFIGARDTFADIGQTIADFMGIES
LEYGKSIFGASHDN
>Mature_414_residues
MLKDKKVVILLFDSFGIGQAPDAADFGDEGADTLGHTVDYFTNNGMSISLPNLSKKGLKKAAEYNRCKEFSQDIAQSEQV
ENAKYGYCAEVSKGKDTPSGHWELAGVPVMFDWYYFTKKQHQSCFDKEFIDKWVERAGITEGFIDAGHASGTEVLKEHGC
ESCVTKKPIIYTSADSVFQVAAHEDYYGLDKLLKICLVAREVLDEMGMKVGRVIARPFIGESADEYVRTGNRRDFSILPP
APTLLDKLVKAGGEVVSIGKIADIYANQGITKKVKATGLEELFDKTIDEYTLAKQNTLVFTNFVDLDSSFGHRRDPKGYG
KALEYLDSRIPDLDAKLDDNTIVVLAADHGCDPTAPGSDHTRECVPFLLWGRNIKPEFIGARDTFADIGQTIADFMGIES
LEYGKSIFGASHDN

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=411, Percent_Identity=53.5279805352798, Blast_Score=425, Evalue=1e-120,
Organism=Escherichia coli, GI1789781, Length=434, Percent_Identity=24.8847926267281, Blast_Score=101, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 45726; Mature: 45726

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKDKKVVILLFDSFGIGQAPDAADFGDEGADTLGHTVDYFTNNGMSISLPNLSKKGLKK
CCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCHHHHHH
AAEYNRCKEFSQDIAQSEQVENAKYGYCAEVSKGKDTPSGHWELAGVPVMFDWYYFTKKQ
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEECCCCEEEHHHHHHHHH
HQSCFDKEFIDKWVERAGITEGFIDAGHASGTEVLKEHGCESCVTKKPIIYTSADSVFQV
HHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHCCCHHHHCCCCEEEECCCHHEEH
AAHEDYYGLDKLLKICLVAREVLDEMGMKVGRVIARPFIGESADEYVRTGNRRDFSILPP
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEECCC
APTLLDKLVKAGGEVVSIGKIADIYANQGITKKVKATGLEELFDKTIDEYTLAKQNTLVF
CHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEE
TNFVDLDSSFGHRRDPKGYGKALEYLDSRIPDLDAKLDDNTIVVLAADHGCDPTAPGSDH
EEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCC
TRECVPFLLWGRNIKPEFIGARDTFADIGQTIADFMGIESLEYGKSIFGASHDN
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLKDKKVVILLFDSFGIGQAPDAADFGDEGADTLGHTVDYFTNNGMSISLPNLSKKGLKK
CCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCHHHHHH
AAEYNRCKEFSQDIAQSEQVENAKYGYCAEVSKGKDTPSGHWELAGVPVMFDWYYFTKKQ
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEECCCCEEEHHHHHHHHH
HQSCFDKEFIDKWVERAGITEGFIDAGHASGTEVLKEHGCESCVTKKPIIYTSADSVFQV
HHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHCCCHHHHCCCCEEEECCCHHEEH
AAHEDYYGLDKLLKICLVAREVLDEMGMKVGRVIARPFIGESADEYVRTGNRRDFSILPP
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEECCC
APTLLDKLVKAGGEVVSIGKIADIYANQGITKKVKATGLEELFDKTIDEYTLAKQNTLVF
CHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEE
TNFVDLDSSFGHRRDPKGYGKALEYLDSRIPDLDAKLDDNTIVVLAADHGCDPTAPGSDH
EEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCC
TRECVPFLLWGRNIKPEFIGARDTFADIGQTIADFMGIESLEYGKSIFGASHDN
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA