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The map label for this gene is ymdB [C]

Identifier: 134300470

GI number: 134300470

Start: 2854418

End: 2854951

Strand: Reverse

Name: ymdB [C]

Synonym: Dred_2634

Alternate gene names: 134300470

Gene position: 2854951-2854418 (Counterclockwise)

Preceding gene: 134300472

Following gene: 134300468

Centisome position: 79.13

GC content: 38.2

Gene sequence:

>534_bases
GTGATAAATACTTACGAAGAGACAAAGGTAACGGATAGGATTAGCTTAATTGAAGGTGATATTACAAAACTAAAAGTTGA
TGCCATAGTCAATGCAGCGAATACCTCCTTACTTGGTGGTGGAGGGGTAGATGGTGCAATCCACCTTGCAGCTGGGCCAG
CTCTGCTTGAAGAGTGCCGCAAACTAAATGGTTGTCCTACAGGTGAAGCAAAAATAACTGCTGGATATAATCTACCTGCA
AGATGGGTTATCCATACACCGGGTCCAATCTGGCGTGGTGGACAAAATAATGAGGAAAGTCTTTTAACTAATTGTTATCG
AAATTCTTTAAACCTTGCAGTAAAGAATGAAATAAAAACGATAGCTTTTCCCTTAATTAGTGCAGGGATATATAGATTCC
CTTTGGAAAGGGCTGTCAATATTGCTGTTAAGGAAGTGAAACAGTTTCTAGATACAGACGCATCCATCAGTAAAATCTAT
ATAGTTCTTTTTAAAAAGTCCCCTTCAAGTATTATGAAGCTTTTAAAAGATTGA

Upstream 100 bases:

>100_bases
GAAATAATAGAACAGCCTGGGGGACAAAGGGAAATTCGTTTATGACATAGGTTTACACATACTTGCAATTAACTTAAACA
TTTTTAGGGGGGATACCTAA

Downstream 100 bases:

>100_bases
AGATTTGGCAATAAAAAGAAGTGAAATGTCTCGACAATGGACTTATACTTTGCCATAAAATAAAGAGTATGTAAAAAAAG
CGTAATAATCAGGAACATTA

Product: appr-1-p processing domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MINTYEETKVTDRISLIEGDITKLKVDAIVNAANTSLLGGGGVDGAIHLAAGPALLEECRKLNGCPTGEAKITAGYNLPA
RWVIHTPGPIWRGGQNNEESLLTNCYRNSLNLAVKNEIKTIAFPLISAGIYRFPLERAVNIAVKEVKQFLDTDASISKIY
IVLFKKSPSSIMKLLKD

Sequences:

>Translated_177_residues
MINTYEETKVTDRISLIEGDITKLKVDAIVNAANTSLLGGGGVDGAIHLAAGPALLEECRKLNGCPTGEAKITAGYNLPA
RWVIHTPGPIWRGGQNNEESLLTNCYRNSLNLAVKNEIKTIAFPLISAGIYRFPLERAVNIAVKEVKQFLDTDASISKIY
IVLFKKSPSSIMKLLKD
>Mature_177_residues
MINTYEETKVTDRISLIEGDITKLKVDAIVNAANTSLLGGGGVDGAIHLAAGPALLEECRKLNGCPTGEAKITAGYNLPA
RWVIHTPGPIWRGGQNNEESLLTNCYRNSLNLAVKNEIKTIAFPLISAGIYRFPLERAVNIAVKEVKQFLDTDASISKIY
IVLFKKSPSSIMKLLKD

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=168, Percent_Identity=55.952380952381, Blast_Score=179, Evalue=9e-46,
Organism=Homo sapiens, GI13569840, Length=170, Percent_Identity=45.8823529411765, Blast_Score=162, Evalue=1e-40,
Organism=Homo sapiens, GI207450721, Length=168, Percent_Identity=38.6904761904762, Blast_Score=117, Evalue=4e-27,
Organism=Homo sapiens, GI8923143, Length=168, Percent_Identity=38.6904761904762, Blast_Score=117, Evalue=5e-27,
Organism=Homo sapiens, GI20336746, Length=159, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=6e-19,
Organism=Homo sapiens, GI154813199, Length=153, Percent_Identity=37.2549019607843, Blast_Score=87, Evalue=7e-18,
Organism=Homo sapiens, GI93141020, Length=162, Percent_Identity=32.0987654320988, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI93141018, Length=162, Percent_Identity=32.0987654320988, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI4758496, Length=162, Percent_Identity=32.0987654320988, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371710, Length=154, Percent_Identity=32.4675324675325, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371706, Length=154, Percent_Identity=32.4675324675325, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371718, Length=141, Percent_Identity=34.0425531914894, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371716, Length=142, Percent_Identity=33.8028169014084, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI226371714, Length=142, Percent_Identity=33.8028169014084, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI226371712, Length=142, Percent_Identity=33.8028169014084, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI165377137, Length=155, Percent_Identity=28.3870967741935, Blast_Score=64, Evalue=6e-11,
Organism=Escherichia coli, GI1787283, Length=167, Percent_Identity=50.8982035928144, Blast_Score=176, Evalue=1e-45,
Organism=Caenorhabditis elegans, GI17538214, Length=158, Percent_Identity=48.1012658227848, Blast_Score=140, Evalue=3e-34,
Organism=Drosophila melanogaster, GI24586353, Length=144, Percent_Identity=38.1944444444444, Blast_Score=96, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 19255; Mature: 19255

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINTYEETKVTDRISLIEGDITKLKVDAIVNAANTSLLGGGGVDGAIHLAAGPALLEECR
CCCCCCHHHHHHHHHHCCCCCCEEEHHHHHHHCCCCEECCCCCCCEEEEECCHHHHHHHH
KLNGCPTGEAKITAGYNLPARWVIHTPGPIWRGGQNNEESLLTNCYRNSLNLAVKNEIKT
HHCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCHHH
IAFPLISAGIYRFPLERAVNIAVKEVKQFLDTDASISKIYIVLFKKSPSSIMKLLKD
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCHHHHHHHHCC
>Mature Secondary Structure
MINTYEETKVTDRISLIEGDITKLKVDAIVNAANTSLLGGGGVDGAIHLAAGPALLEECR
CCCCCCHHHHHHHHHHCCCCCCEEEHHHHHHHCCCCEECCCCCCCEEEEECCHHHHHHHH
KLNGCPTGEAKITAGYNLPARWVIHTPGPIWRGGQNNEESLLTNCYRNSLNLAVKNEIKT
HHCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCHHH
IAFPLISAGIYRFPLERAVNIAVKEVKQFLDTDASISKIYIVLFKKSPSSIMKLLKD
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12125824 [H]