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The map label for this gene is recO

Identifier: 134300314

GI number: 134300314

Start: 2697596

End: 2698366

Strand: Reverse

Name: recO

Synonym: Dred_2475

Alternate gene names: 134300314

Gene position: 2698366-2697596 (Counterclockwise)

Preceding gene: 134300317

Following gene: 134300313

Centisome position: 74.79

GC content: 41.37

Gene sequence:

>771_bases
ATGAAAATATATAAGTTAGACGCAATTGTTTTAAAGTCCCGGGATATGAGAGAAGCCGATAAAATTCTTACGGTATATTC
CATACAACGGGGAAAGCAAAGAATTGTGGCCCATGGTGCCGCAAAGCCCAACAGTCGCAAAAGGGGAGCTGTGCAGCCCT
TTTGTTTTTCTGAATTTATGTTGCACCGGGGAAGGGAAATTGATGCCATCAGCCAGGCAGAATTAAAAGAGGGTTTTGCA
GAGATAAGGTATGACCTGGATCGACTAACGGCTGCAGCCTATATAACCGAGTTGCTGGATGGATTTGTAGCGGAGGGTGA
GCCTAACCAGAACTTATTTAGTTTACTTTACAGTGCACTGCACCTGATTGCAGTTGGTAATAGTGAAATGATTTTACGGG
GCTTTGAAGCGAAACTACTGGGGTTTTCAGGACTTCAGCCGGATCTAACCAACTGCAGTGTATGTGGTGCTGAGATTCGG
GAAACCAAGGTTTCCTTTGCAGTCCAACAGGGAGGGATTCTTTGTAAGGATTGTGCAACCCATGAAAAAAGAATCCTAAA
ATTTAGCCGAGGAACAGTAGAGGTGTTGAAAACCCTTTATCGTTGGGAATTAACGAAACTGCAACAATTAAAAGTTTCTG
AACCCCTAAAGACAGAACTTAGTGCACTATTACGTTCCTATATTGAGTATTACCTAGAAAAAAAATTAAAAACCACAGAA
TTTATGGATCGCTTGTATAAAAGTAACTTGGGTAGGGGTACAAATATATAA

Upstream 100 bases:

>100_bases
TTTCTACTATTTTGTCCTAAAGGTCACCGAAAGATAATGTGCTAAATAAGATATAATAGAATTAATTTAGTGGTAGTAAA
GAAAGGTGACAGCCTAGTTC

Downstream 100 bases:

>100_bases
TACAAAGGACTATGGGGAGGTTTGATATAGTGACCAGTGAACTGGAGAAGATAGACCTTCTGCGAGCCCGACTGGGCGTT
AGTTACAAGGAAGCAAAGGA

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MKIYKLDAIVLKSRDMREADKILTVYSIQRGKQRIVAHGAAKPNSRKRGAVQPFCFSEFMLHRGREIDAISQAELKEGFA
EIRYDLDRLTAAAYITELLDGFVAEGEPNQNLFSLLYSALHLIAVGNSEMILRGFEAKLLGFSGLQPDLTNCSVCGAEIR
ETKVSFAVQQGGILCKDCATHEKRILKFSRGTVEVLKTLYRWELTKLQQLKVSEPLKTELSALLRSYIEYYLEKKLKTTE
FMDRLYKSNLGRGTNI

Sequences:

>Translated_256_residues
MKIYKLDAIVLKSRDMREADKILTVYSIQRGKQRIVAHGAAKPNSRKRGAVQPFCFSEFMLHRGREIDAISQAELKEGFA
EIRYDLDRLTAAAYITELLDGFVAEGEPNQNLFSLLYSALHLIAVGNSEMILRGFEAKLLGFSGLQPDLTNCSVCGAEIR
ETKVSFAVQQGGILCKDCATHEKRILKFSRGTVEVLKTLYRWELTKLQQLKVSEPLKTELSALLRSYIEYYLEKKLKTTE
FMDRLYKSNLGRGTNI
>Mature_256_residues
MKIYKLDAIVLKSRDMREADKILTVYSIQRGKQRIVAHGAAKPNSRKRGAVQPFCFSEFMLHRGREIDAISQAELKEGFA
EIRYDLDRLTAAAYITELLDGFVAEGEPNQNLFSLLYSALHLIAVGNSEMILRGFEAKLLGFSGLQPDLTNCSVCGAEIR
ETKVSFAVQQGGILCKDCATHEKRILKFSRGTVEVLKTLYRWELTKLQQLKVSEPLKTELSALLRSYIEYYLEKKLKTTE
FMDRLYKSNLGRGTNI

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_DESRM (A4J7D2)

Other databases:

- EMBL:   CP000612
- RefSeq:   YP_001113810.1
- STRING:   A4J7D2
- GeneID:   4957294
- GenomeReviews:   CP000612_GR
- KEGG:   drm:Dred_2475
- eggNOG:   COG1381
- HOGENOM:   HBG634481
- OMA:   WHLERGL
- PhylomeDB:   A4J7D2
- BioCyc:   DRED349161:DRED_2475-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 29053; Mature: 29053

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCCCCCCC
>Mature Secondary Structure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HHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA