| Definition | Desulfotomaculum reducens MI-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009253 |
| Length | 3,608,104 |
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The map label for this gene is 134300183
Identifier: 134300183
GI number: 134300183
Start: 2562267
End: 2563634
Strand: Reverse
Name: 134300183
Synonym: Dred_2344
Alternate gene names: NA
Gene position: 2563634-2562267 (Counterclockwise)
Preceding gene: 134300184
Following gene: 134300181
Centisome position: 71.05
GC content: 43.49
Gene sequence:
>1368_bases ATGAAAAGTATGCGCACATTTCTTTTCTTGCTACTATGTCTTTTGCAGCCCGTCACAGTTTGGGCTCTGGGAGTGCAGTC CTCGACGGTGGACCTTAAGGATATAAACAATTACTGGGCTAAGCAGCCAATAGAGAAAATAACAGCTATTGGTTTAATGA TACCATTTGAGGATAACACCTTTCGGCCCAATCAACCCGTTAGCTGCATGGAGTCCATCACCAGCATAATGGATGGGGCC GGCTATGCTGCACAGATTAAAAAAATGAAGTCACTAAAGAACAGGCCGGCCACTGCTTATGTAGCTCCTATTAATCAAAA ATATGTGGATTTTGCTGTACAACAAAATTATCTACCAGGGTCCATGCTCAAAAATTTTCGTTATGACAGGCCAATTAGCC GGGGGGAATTGGCGGTTTTACTAGCAAAAGCTTTGTATCTAAAAGCACCAGCGGAAGATACCATTTTTAAAGACAATGAC AGTATTCCGAAAGACTACCTGCCAGCGGTACAGGCGGTTCATGAACTGAAAGTGATGTCTGGCTTTCCGGATGGAACCTT TAGAGCAAACGGTAGTGTCACCAGAGGCCAGTTAGCAGCTATTTTATCCAAACTATATGATCAGGGTTGGATTTACCTGG ATGCTAAGAAGAAAGTCAGTGGCTGGATAGCAGGGACTACTGAGGGGAAAAATGGCATTGATGTACAAGTTAGCTCGCTC AAGGGCATTCAGAAGGTTGTTGCCAATGCCAGTTGTAAAGCCTACTGGCAGGGCCGTCCGATGAATTTAAATCAGTGTAT CAATTATCGAATAGAGGGTATTTTGGACAGTAAAAGAAGATTGGCCTATGTAGAGCTTGTTGATCGTAGAAACTTTTCAC CGGTACAAAGGGAAGTATATGCCAGTTACCTACGCCATGCCGAAGGGGAGCCGTTTATCCTCACGGTGAAGGATTTAATG AATGAGGAGGTGGACTATCCGATTGCCTGGGATGCAGAGACCAGTGATGAAAAATCTAAAAGCAAAACCAATAAAGACCT GCTAAAAAAATTAAAGTCTGGGCAGTTTTTAAAACTTGGTCTAACCTCTGGTGGTACTGTGAAAGCCTTAACTATCTTGG ATGTGAAAAATATTAGTGGAGAAATTGACCGGATTAACCGGGCACTTTACTTAGAAGAAAAGGGAAAGGGCAGCAGCAAA AAATATGTGCCGGATCACTTCTATGGCTGGGATGCCGGTAGAATTGTGGATAAAGAAGGAGACGATACCAGTGATCCCGA TGAAAAGGATAAAGTGAAAATCTTTTACATTGGCGAGCCCTTCTATGAAAGGGTGCTGGAGATTCAGGTACTGGAGCGGG TGGATTAG
Upstream 100 bases:
>100_bases CTATTTTATTGAAGGACGGCAGTATCCTTATTTATACGGACAAGGGTACTATGTATCGGTTTGTGGATGTATTTAAGGGG TGAGGATAATAAGAATTCTA
Downstream 100 bases:
>100_bases ATGTTAGGTTTTTCATAGGGATTGTTGGAAGGCAAAAAAGGACCTACCCTAACGGTAAGTCCTTTTTTGCTACATCTTAC TAATGTCCCTAATGTCCGCA
Product: S-layer domain-containing protein
Products: NA
Alternate protein names: S-Layer Domain-Containing Protein
Number of amino acids: Translated: 455; Mature: 455
Protein sequence:
>455_residues MKSMRTFLFLLLCLLQPVTVWALGVQSSTVDLKDINNYWAKQPIEKITAIGLMIPFEDNTFRPNQPVSCMESITSIMDGA GYAAQIKKMKSLKNRPATAYVAPINQKYVDFAVQQNYLPGSMLKNFRYDRPISRGELAVLLAKALYLKAPAEDTIFKDND SIPKDYLPAVQAVHELKVMSGFPDGTFRANGSVTRGQLAAILSKLYDQGWIYLDAKKKVSGWIAGTTEGKNGIDVQVSSL KGIQKVVANASCKAYWQGRPMNLNQCINYRIEGILDSKRRLAYVELVDRRNFSPVQREVYASYLRHAEGEPFILTVKDLM NEEVDYPIAWDAETSDEKSKSKTNKDLLKKLKSGQFLKLGLTSGGTVKALTILDVKNISGEIDRINRALYLEEKGKGSSK KYVPDHFYGWDAGRIVDKEGDDTSDPDEKDKVKIFYIGEPFYERVLEIQVLERVD
Sequences:
>Translated_455_residues MKSMRTFLFLLLCLLQPVTVWALGVQSSTVDLKDINNYWAKQPIEKITAIGLMIPFEDNTFRPNQPVSCMESITSIMDGA GYAAQIKKMKSLKNRPATAYVAPINQKYVDFAVQQNYLPGSMLKNFRYDRPISRGELAVLLAKALYLKAPAEDTIFKDND SIPKDYLPAVQAVHELKVMSGFPDGTFRANGSVTRGQLAAILSKLYDQGWIYLDAKKKVSGWIAGTTEGKNGIDVQVSSL KGIQKVVANASCKAYWQGRPMNLNQCINYRIEGILDSKRRLAYVELVDRRNFSPVQREVYASYLRHAEGEPFILTVKDLM NEEVDYPIAWDAETSDEKSKSKTNKDLLKKLKSGQFLKLGLTSGGTVKALTILDVKNISGEIDRINRALYLEEKGKGSSK KYVPDHFYGWDAGRIVDKEGDDTSDPDEKDKVKIFYIGEPFYERVLEIQVLERVD >Mature_455_residues MKSMRTFLFLLLCLLQPVTVWALGVQSSTVDLKDINNYWAKQPIEKITAIGLMIPFEDNTFRPNQPVSCMESITSIMDGA GYAAQIKKMKSLKNRPATAYVAPINQKYVDFAVQQNYLPGSMLKNFRYDRPISRGELAVLLAKALYLKAPAEDTIFKDND SIPKDYLPAVQAVHELKVMSGFPDGTFRANGSVTRGQLAAILSKLYDQGWIYLDAKKKVSGWIAGTTEGKNGIDVQVSSL KGIQKVVANASCKAYWQGRPMNLNQCINYRIEGILDSKRRLAYVELVDRRNFSPVQREVYASYLRHAEGEPFILTVKDLM NEEVDYPIAWDAETSDEKSKSKTNKDLLKKLKSGQFLKLGLTSGGTVKALTILDVKNISGEIDRINRALYLEEKGKGSSK KYVPDHFYGWDAGRIVDKEGDDTSDPDEKDKVKIFYIGEPFYERVLEIQVLERVD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51261; Mature: 51261
Theoretical pI: Translated: 9.14; Mature: 9.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSMRTFLFLLLCLLQPVTVWALGVQSSTVDLKDINNYWAKQPIEKITAIGLMIPFEDNT CCHHHHHHHHHHHHHHHHHHEEECCCCCEEEHHHHHHHHHHHHHHHHHHHEEEEECCCCC FRPNQPVSCMESITSIMDGAGYAAQIKKMKSLKNRPATAYVAPINQKYVDFAVQQNYLPG CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCH SMLKNFRYDRPISRGELAVLLAKALYLKAPAEDTIFKDNDSIPKDYLPAVQAVHELKVMS HHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHC GFPDGTFRANGSVTRGQLAAILSKLYDQGWIYLDAKKKVSGWIAGTTEGKNGIDVQVSSL CCCCCCEECCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCEEEEECCCCCCCCEEEEHHH KGIQKVVANASCKAYWQGRPMNLNQCINYRIEGILDSKRRLAYVELVDRRNFSPVQREVY HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCHHEEHHHHHHCCCCCHHHHHHH ASYLRHAEGEPFILTVKDLMNEEVDYPIAWDAETSDEKSKSKTNKDLLKKLKSGQFLKLG HHHHHHCCCCCEEEEHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE LTSGGTVKALTILDVKNISGEIDRINRALYLEEKGKGSSKKYVPDHFYGWDAGRIVDKEG ECCCCCEEEEEEEEECCCCCHHHHHCEEEEEEECCCCCCCCCCCCCCCCCCCCCEECCCC DDTSDPDEKDKVKIFYIGEPFYERVLEIQVLERVD CCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCC >Mature Secondary Structure MKSMRTFLFLLLCLLQPVTVWALGVQSSTVDLKDINNYWAKQPIEKITAIGLMIPFEDNT CCHHHHHHHHHHHHHHHHHHEEECCCCCEEEHHHHHHHHHHHHHHHHHHHEEEEECCCCC FRPNQPVSCMESITSIMDGAGYAAQIKKMKSLKNRPATAYVAPINQKYVDFAVQQNYLPG CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCH SMLKNFRYDRPISRGELAVLLAKALYLKAPAEDTIFKDNDSIPKDYLPAVQAVHELKVMS HHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHC GFPDGTFRANGSVTRGQLAAILSKLYDQGWIYLDAKKKVSGWIAGTTEGKNGIDVQVSSL CCCCCCEECCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCEEEEECCCCCCCCEEEEHHH KGIQKVVANASCKAYWQGRPMNLNQCINYRIEGILDSKRRLAYVELVDRRNFSPVQREVY HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCHHEEHHHHHHCCCCCHHHHHHH ASYLRHAEGEPFILTVKDLMNEEVDYPIAWDAETSDEKSKSKTNKDLLKKLKSGQFLKLG HHHHHHCCCCCEEEEHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE LTSGGTVKALTILDVKNISGEIDRINRALYLEEKGKGSSKKYVPDHFYGWDAGRIVDKEG ECCCCCEEEEEEEEECCCCCHHHHHCEEEEEEECCCCCCCCCCCCCCCCCCCCCEECCCC DDTSDPDEKDKVKIFYIGEPFYERVLEIQVLERVD CCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA