| Definition | Desulfotomaculum reducens MI-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009253 |
| Length | 3,608,104 |
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The map label for this gene is engD [H]
Identifier: 134300054
GI number: 134300054
Start: 2419497
End: 2420597
Strand: Reverse
Name: engD [H]
Synonym: Dred_2210
Alternate gene names: 134300054
Gene position: 2420597-2419497 (Counterclockwise)
Preceding gene: 134300056
Following gene: 134300053
Centisome position: 67.09
GC content: 43.6
Gene sequence:
>1101_bases ATGTCAACTAACCTTATAAGTGGGATAATCGGTCTGCCGATGGTGGGAAAAACAACAATCTTTAATTTATTAACCAATTC CAACCAGGAAGTATCAAATTTTTTAAGTGGAAAAACCGAAACAATCACTGCATCTGCGAGAGTGCCTGATAAGAGAATTG ATTTTTTAGTGAATATGTACAAGCCACGAAAGATTACCTATGCTCAAATTCAATTCAGTGAAGTGCCTGGATTAGTGCGG GGAGCCAGCGAAGGAAAAGGAGTTGGCAATCAATTCCTCAGTGCCATTCGAAATGCTGATCTGCTGGTACATGTTGTAAG GGCCTATCAGAATCCCGACGTTCCCCACGTAGAAGACGAAATTAACCCCCTGCGGGATATAGAAACCATTGCTGTGGAGA TTTTATTGGCAGATATGGATCTGGTGGAAAAAAGAATCCAAAGAATCCAGTCTGGCAAAAAAATTACCAAAGAGAATGCC TTTGAGCTAGAAGTATTAAAAAAATGTCTGCAGGCACTGGAAGAAGAGACGCCCATCAGCCAATTGGGGCTAACCGAAGA AGAAAAATTAACATTAAAAAACTATTCCTTTTTAACAGAAAAACCGATGCTGCTGGTGATAAACATAGATGAAGATCAAT TTAGGGAGGGTAGCTATCCCACTAAAGAAGAAGTAGAAAAATACGCTGCTGAAAAGGGAATTGCTGTAACAGAAATCTGC GGTCGCATAGAAATGGAGATCAGTCAACTGCCGGAAGCTGACAGGCTTCTCTTTATGGAAGACCTGGGGACGAACGAACC GGGCATTGATCGTTTGGCCAGGGCGGTGTATGATTACCTGGGTTTAATTTCTTTCCTTACCGCCGGGGAAGATGAAGTAC GGGCCTGGACCATCAAACGTAACACCGATGCCAAAAGGGCGGCGGGTAAGATTCACTCCGATATTGAGCGGGGCTTTATT AGGGCAGAAGTGATTGCCTTTGAAGATTTGGCATCCACAGGTTCTCTGGCCAAAGCCCGGGAAAAGGGCCTGCTGCGCTT AGAGGGAAAAGAGTATGTTGTACAGGATGGCGATATTATCAACTTTCGATTTAACGTGTAG
Upstream 100 bases:
>100_bases AAACATTGCAAAAAATGTCATTCTGAATGAAACATTCATGGACCTATGTAGCAAAGGGTTGAGAGATGTGATAAAATTCT GAACAACAGAGGTGATGAAT
Downstream 100 bases:
>100_bases ATATGTGGCAGCTCTTTATCTTTAGGGCTGCCCATTTGTTTTAGCCCTGTATGCATACCCCTATTCCTGAGTTAAAATAT ATCAAGTAGCTTTTTACAGC
Product: GTP-dependent nucleic acid-binding protein EngD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 366; Mature: 365
Protein sequence:
>366_residues MSTNLISGIIGLPMVGKTTIFNLLTNSNQEVSNFLSGKTETITASARVPDKRIDFLVNMYKPRKITYAQIQFSEVPGLVR GASEGKGVGNQFLSAIRNADLLVHVVRAYQNPDVPHVEDEINPLRDIETIAVEILLADMDLVEKRIQRIQSGKKITKENA FELEVLKKCLQALEEETPISQLGLTEEEKLTLKNYSFLTEKPMLLVINIDEDQFREGSYPTKEEVEKYAAEKGIAVTEIC GRIEMEISQLPEADRLLFMEDLGTNEPGIDRLARAVYDYLGLISFLTAGEDEVRAWTIKRNTDAKRAAGKIHSDIERGFI RAEVIAFEDLASTGSLAKAREKGLLRLEGKEYVVQDGDIINFRFNV
Sequences:
>Translated_366_residues MSTNLISGIIGLPMVGKTTIFNLLTNSNQEVSNFLSGKTETITASARVPDKRIDFLVNMYKPRKITYAQIQFSEVPGLVR GASEGKGVGNQFLSAIRNADLLVHVVRAYQNPDVPHVEDEINPLRDIETIAVEILLADMDLVEKRIQRIQSGKKITKENA FELEVLKKCLQALEEETPISQLGLTEEEKLTLKNYSFLTEKPMLLVINIDEDQFREGSYPTKEEVEKYAAEKGIAVTEIC GRIEMEISQLPEADRLLFMEDLGTNEPGIDRLARAVYDYLGLISFLTAGEDEVRAWTIKRNTDAKRAAGKIHSDIERGFI RAEVIAFEDLASTGSLAKAREKGLLRLEGKEYVVQDGDIINFRFNV >Mature_365_residues STNLISGIIGLPMVGKTTIFNLLTNSNQEVSNFLSGKTETITASARVPDKRIDFLVNMYKPRKITYAQIQFSEVPGLVRG ASEGKGVGNQFLSAIRNADLLVHVVRAYQNPDVPHVEDEINPLRDIETIAVEILLADMDLVEKRIQRIQSGKKITKENAF ELEVLKKCLQALEEETPISQLGLTEEEKLTLKNYSFLTEKPMLLVINIDEDQFREGSYPTKEEVEKYAAEKGIAVTEICG RIEMEISQLPEADRLLFMEDLGTNEPGIDRLARAVYDYLGLISFLTAGEDEVRAWTIKRNTDAKRAAGKIHSDIERGFIR AEVIAFEDLASTGSLAKAREKGLLRLEGKEYVVQDGDIINFRFNV
Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]
COG id: COG0012
COG function: function code J; Predicted GTPase, probable translation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI58761500, Length=376, Percent_Identity=36.1702127659575, Blast_Score=237, Evalue=1e-62, Organism=Homo sapiens, GI58761502, Length=179, Percent_Identity=38.5474860335196, Blast_Score=129, Evalue=6e-30, Organism=Escherichia coli, GI1787454, Length=361, Percent_Identity=43.7673130193906, Blast_Score=311, Evalue=4e-86, Organism=Caenorhabditis elegans, GI17509631, Length=371, Percent_Identity=37.466307277628, Blast_Score=260, Evalue=7e-70, Organism=Saccharomyces cerevisiae, GI6319499, Length=375, Percent_Identity=33.6, Blast_Score=182, Evalue=6e-47, Organism=Saccharomyces cerevisiae, GI6321773, Length=388, Percent_Identity=30.4123711340206, Blast_Score=171, Evalue=2e-43, Organism=Saccharomyces cerevisiae, GI6321649, Length=231, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=1e-12, Organism=Drosophila melanogaster, GI24640873, Length=377, Percent_Identity=36.604774535809, Blast_Score=235, Evalue=3e-62, Organism=Drosophila melanogaster, GI24640877, Length=377, Percent_Identity=36.604774535809, Blast_Score=235, Evalue=3e-62, Organism=Drosophila melanogaster, GI24640875, Length=377, Percent_Identity=36.604774535809, Blast_Score=235, Evalue=3e-62, Organism=Drosophila melanogaster, GI24640879, Length=335, Percent_Identity=36.1194029850746, Blast_Score=204, Evalue=7e-53,
Paralogues:
None
Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012675 - InterPro: IPR004396 - InterPro: IPR013029 - InterPro: IPR006073 - InterPro: IPR002917 - InterPro: IPR012676 - InterPro: IPR023192 [H]
Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]
EC number: NA
Molecular weight: Translated: 41042; Mature: 40910
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTNLISGIIGLPMVGKTTIFNLLTNSNQEVSNFLSGKTETITASARVPDKRIDFLVNMY CCCHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCC KPRKITYAQIQFSEVPGLVRGASEGKGVGNQFLSAIRNADLLVHVVRAYQNPDVPHVEDE CCCEEEEEEEEHHHCCHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHH INPLRDIETIAVEILLADMDLVEKRIQRIQSGKKITKENAFELEVLKKCLQALEEETPIS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHCCCHH QLGLTEEEKLTLKNYSFLTEKPMLLVINIDEDQFREGSYPTKEEVEKYAAEKGIAVTEIC HHCCCCHHHEEECCCCEECCCCEEEEEECCHHHHCCCCCCCHHHHHHHHHHCCCCHHHHH GRIEMEISQLPEADRLLFMEDLGTNEPGIDRLARAVYDYLGLISFLTAGEDEVRAWTIKR HHHHHHHHHCCCHHHEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC NTDAKRAAGKIHSDIERGFIRAEVIAFEDLASTGSLAKAREKGLLRLEGKEYVVQDGDII CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEECCCEEEEECCCEE NFRFNV EEEECC >Mature Secondary Structure STNLISGIIGLPMVGKTTIFNLLTNSNQEVSNFLSGKTETITASARVPDKRIDFLVNMY CCHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCC KPRKITYAQIQFSEVPGLVRGASEGKGVGNQFLSAIRNADLLVHVVRAYQNPDVPHVEDE CCCEEEEEEEEHHHCCHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHH INPLRDIETIAVEILLADMDLVEKRIQRIQSGKKITKENAFELEVLKKCLQALEEETPIS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHCCCHH QLGLTEEEKLTLKNYSFLTEKPMLLVINIDEDQFREGSYPTKEEVEKYAAEKGIAVTEIC HHCCCCHHHEEECCCCEECCCCEEEEEECCHHHHCCCCCCCHHHHHHHHHHCCCCHHHHH GRIEMEISQLPEADRLLFMEDLGTNEPGIDRLARAVYDYLGLISFLTAGEDEVRAWTIKR HHHHHHHHHCCCHHHEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC NTDAKRAAGKIHSDIERGFIRAEVIAFEDLASTGSLAKAREKGLLRLEGKEYVVQDGDII CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEECCCEEEEECCCEE NFRFNV EEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]