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The map label for this gene is cofH [H]

Identifier: 134300037

GI number: 134300037

Start: 2398305

End: 2399372

Strand: Reverse

Name: cofH [H]

Synonym: Dred_2193

Alternate gene names: 134300037

Gene position: 2399372-2398305 (Counterclockwise)

Preceding gene: 134300038

Following gene: 134300036

Centisome position: 66.5

GC content: 44.48

Gene sequence:

>1068_bases
ATGTTGCAGGTTAAAGAGATACTCAATAAAGCTGTGGCAGGTGAGAGGTTAAGTGTAGAAGAGGGCGTTGCCCTCTTAAA
TTCTTCTGATTTAATTCAACTGGGAGCAGCAGCAAACACCATTCGCAAAAGGTTGCATCCAAAAAATCGTACCACCTTTA
TTATTGATCGCAATATTAATTATACAAACATATGCACCTGTAAGTGTAAATTCTGTGCTTTCTGGCGGGAACCCAGTGAC
CCGGATGCCTATATCTTGCCTCAGGAAGAGTTATATCAAAAAATTGAAGAGACCATTGCTGTAGGTGGCACAGAGATTTT
AGTTCAGGGTGGGTTACATCCAGAATTAGGACTGGATTACTATGTGGATTTGCTAAAATCCATTAAGGAACGTTACAATA
TTCACATTCATTCTTTTTCGCCACCGGAAATTTGGCATATCGCCAGAAAAGAAGGTCTGCCATTACTGCGGGTTATTGAG
GCCTTAAAGAATGCCGGGCTTGATTCAATCCCCGGAGGTGGGGCAGAGATTCTGGATAACCGTGTACGAAGGATCATTAG
CCCGGATAAAGTTACTTGGGAAGAATGGATGGAGGTCATGACCATTGCCCATTGTCTGGACATGAAAACCACAGCAACCA
TGATGTTCGGGCATGTTGAAACTCCTGAAGAAAGGATTCTGCACATGGTCAGGGTAAGAGATACCCAGGACAAGACCGGA
GGTTTTACTGCCTTTATCCCTTGGAGTTTTCAACCTAAAAACACCAAATTAGGAGGAGAGACAACCTCTGGGATTGATTA
TTTAAAAACCTTGGCAGTGGCTAGATTAATGCTCGATAATGTAAAGAACATTCAGGCCTCGTGGGTGACACAGGGTGCCA
AGATGGCTCAAGTATCGCTAAATTTTGGTGCCAATGATTTTGGCAGCACCATGCTGGAGGAGAATGTTGTGAGGGCAGCC
GGCGTCACCTACCGAGTGGCCCTCCAGGAAATCCTTCGCTGCATTCGTGAAGCAGGTTTCCGTCCGGCCCAGCGTACCAC
TGATTATCGTATTATTAAAGAAATGTAA

Upstream 100 bases:

>100_bases
GCAGAGGACCATCGAAGGGCTTTATTAACCTTTTATGATTACTGTTACAAGAGCGGCCTTATTGAGGAGAGAGTACGATT
GGCAATATGGGGTGAAGAAA

Downstream 100 bases:

>100_bases
GCGAGAAGCCATAGGCATCTCGCTTTTTAAAATTAACCGATGTTTTTGAAAGCGCTGCTAAAAATTATAATAATCCTTCA
GCCAAGGAACAAGAAGTTTA

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 2 [H]

Number of amino acids: Translated: 355; Mature: 355

Protein sequence:

>355_residues
MLQVKEILNKAVAGERLSVEEGVALLNSSDLIQLGAAANTIRKRLHPKNRTTFIIDRNINYTNICTCKCKFCAFWREPSD
PDAYILPQEELYQKIEETIAVGGTEILVQGGLHPELGLDYYVDLLKSIKERYNIHIHSFSPPEIWHIARKEGLPLLRVIE
ALKNAGLDSIPGGGAEILDNRVRRIISPDKVTWEEWMEVMTIAHCLDMKTTATMMFGHVETPEERILHMVRVRDTQDKTG
GFTAFIPWSFQPKNTKLGGETTSGIDYLKTLAVARLMLDNVKNIQASWVTQGAKMAQVSLNFGANDFGSTMLEENVVRAA
GVTYRVALQEILRCIREAGFRPAQRTTDYRIIKEM

Sequences:

>Translated_355_residues
MLQVKEILNKAVAGERLSVEEGVALLNSSDLIQLGAAANTIRKRLHPKNRTTFIIDRNINYTNICTCKCKFCAFWREPSD
PDAYILPQEELYQKIEETIAVGGTEILVQGGLHPELGLDYYVDLLKSIKERYNIHIHSFSPPEIWHIARKEGLPLLRVIE
ALKNAGLDSIPGGGAEILDNRVRRIISPDKVTWEEWMEVMTIAHCLDMKTTATMMFGHVETPEERILHMVRVRDTQDKTG
GFTAFIPWSFQPKNTKLGGETTSGIDYLKTLAVARLMLDNVKNIQASWVTQGAKMAQVSLNFGANDFGSTMLEENVVRAA
GVTYRVALQEILRCIREAGFRPAQRTTDYRIIKEM
>Mature_355_residues
MLQVKEILNKAVAGERLSVEEGVALLNSSDLIQLGAAANTIRKRLHPKNRTTFIIDRNINYTNICTCKCKFCAFWREPSD
PDAYILPQEELYQKIEETIAVGGTEILVQGGLHPELGLDYYVDLLKSIKERYNIHIHSFSPPEIWHIARKEGLPLLRVIE
ALKNAGLDSIPGGGAEILDNRVRRIISPDKVTWEEWMEVMTIAHCLDMKTTATMMFGHVETPEERILHMVRVRDTQDKTG
GFTAFIPWSFQPKNTKLGGETTSGIDYLKTLAVARLMLDNVKNIQASWVTQGAKMAQVSLNFGANDFGSTMLEENVVRAA
GVTYRVALQEILRCIREAGFRPAQRTTDYRIIKEM

Specific function: Catalyzes the radical-mediated transfer of the hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino- 6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl- 8-hydroxy-5-deazariboflavin (FO) [H]

COG id: COG1060

COG function: function code HR; Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. CofH family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR019940
- InterPro:   IPR006638
- InterPro:   IPR020050
- InterPro:   IPR005244
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 40063; Mature: 40063

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQVKEILNKAVAGERLSVEEGVALLNSSDLIQLGAAANTIRKRLHPKNRTTFIIDRNIN
CCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEHHHHHHHHHHHCCCCCCEEEEEECCCC
YTNICTCKCKFCAFWREPSDPDAYILPQEELYQKIEETIAVGGTEILVQGGLHPELGLDY
CCEEEEEEEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHH
YVDLLKSIKERYNIHIHSFSPPEIWHIARKEGLPLLRVIEALKNAGLDSIPGGGAEILDN
HHHHHHHHHHHHEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHH
RVRRIISPDKVTWEEWMEVMTIAHCLDMKTTATMMFGHVETPEERILHMVRVRDTQDKTG
HHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCC
GFTAFIPWSFQPKNTKLGGETTSGIDYLKTLAVARLMLDNVKNIQASWVTQGAKMAQVSL
CEEEEECCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
NFGANDFGSTMLEENVVRAAGVTYRVALQEILRCIREAGFRPAQRTTDYRIIKEM
ECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCC
>Mature Secondary Structure
MLQVKEILNKAVAGERLSVEEGVALLNSSDLIQLGAAANTIRKRLHPKNRTTFIIDRNIN
CCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEHHHHHHHHHHHCCCCCCEEEEEECCCC
YTNICTCKCKFCAFWREPSDPDAYILPQEELYQKIEETIAVGGTEILVQGGLHPELGLDY
CCEEEEEEEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHH
YVDLLKSIKERYNIHIHSFSPPEIWHIARKEGLPLLRVIEALKNAGLDSIPGGGAEILDN
HHHHHHHHHHHHEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHH
RVRRIISPDKVTWEEWMEVMTIAHCLDMKTTATMMFGHVETPEERILHMVRVRDTQDKTG
HHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCC
GFTAFIPWSFQPKNTKLGGETTSGIDYLKTLAVARLMLDNVKNIQASWVTQGAKMAQVSL
CEEEEECCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
NFGANDFGSTMLEENVVRAAGVTYRVALQEILRCIREAGFRPAQRTTDYRIIKEM
ECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11930014 [H]