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The map label for this gene is rnhB [H]

Identifier: 134298779

GI number: 134298779

Start: 974703

End: 975770

Strand: Reverse

Name: rnhB [H]

Synonym: Dred_0914

Alternate gene names: 134298779

Gene position: 975770-974703 (Counterclockwise)

Preceding gene: 134298780

Following gene: 134298778

Centisome position: 27.04

GC content: 36.42

Gene sequence:

>1068_bases
ATGTTTTCTGATGACCCACAGACTAGTATCGAAAAAATGTTGAGAAAAGCTTGTCCATTTAGAGGTTTTGCCGAATGTTT
GCTAGAAGACTGTATGTCTTGGTCAGGATCTGACTGCCAGATGTTCTCTGTTAACCCCATGGATGGCGGTATTAGCAATG
GCACTGCAATCAATCCTCCTGTGGCCATCAAAACAACTGGTAAAAAAAATAAGTCTAAAGAAACATTTGATGAATTTATA
ACGCGGGTTAGTAAAAAAAGATATGCGGGGATAGATGAAGTTGGCGTAAGCAGTATTGCAGGCCCTATGGTTGCGGCTGT
TGTGGTTTTACCTCATGACCATAATATACCAGGCATCCCAAGGGATAGCAAAGAAATGACTTTGAAAAGCATTGAAGAGA
TTTCGTCCTTAATATTTGAAAAAGCTGATTTTTGGCATATTGCATCTATTTCCCCAAAGGAAATAGACGATATCGGACCG
GAATTAGCAAGGGAAAAGTTATGGATGGAATGTGCAAACAAAGTTAGATCTGTTTTCCCTAAAATCCGTATTATTGTTGA
TGGCAAAGATAAAATTCCTGGCTTCACTAAGCAAAATGCTGTTTCCAAAGGCGACTCTATATTTTCGGGAGTTTCTGCAG
CTGCTATAGTAGCCAAACAATATTGTGATAATGAAATGAGAATACTTCACAATTACTATCCTCAATATAATTTTTCAAAA
AACAAGGGTTATCCAGTATATGAACATTATGTTGCTATAAAAAATTACGGAATATGCCCATCACATAGAATAAATATGAC
ACAAAATGTACTAGACAATCCCCCTGAGAAACCAGAGGCCAACCTTTCTTTCAAAGAACTAGGGGTTATTATTAAAGAAA
TATCAGAATTACTTAGTGTGGATAGGTCTTTAGCAAGAGATGAATTTGAATATCCATTTATGAGAAGACAATATAGCAAT
GTAATCCTTCAAGGAAAATTACCTTCACCTAAGGAACAATATCATATCTTACGCTGTGCAAGGGATATCAAGGATCGAGC
TGCTAAAAAATTCAGCTCTAAATTTTAA

Upstream 100 bases:

>100_bases
CTTTGGGCAACCCTTCAATCGGGGTACTGGTAGGTTATTTTAACCTTTGATTTTATTACGCTTTGTGGGTAGCTCAAATA
AAAAACTGGGGGTGTCTATT

Downstream 100 bases:

>100_bases
AGGTAGTGAGTCATACCAAACAACTATTATACAATATAAATCCCCTTGTTCTGCGGTATAGTTAGGACTTCCGGCACCAA
ACCCCGTATAATCGTTTTTG

Product: ribonuclease H

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 355; Mature: 355

Protein sequence:

>355_residues
MFSDDPQTSIEKMLRKACPFRGFAECLLEDCMSWSGSDCQMFSVNPMDGGISNGTAINPPVAIKTTGKKNKSKETFDEFI
TRVSKKRYAGIDEVGVSSIAGPMVAAVVVLPHDHNIPGIPRDSKEMTLKSIEEISSLIFEKADFWHIASISPKEIDDIGP
ELAREKLWMECANKVRSVFPKIRIIVDGKDKIPGFTKQNAVSKGDSIFSGVSAAAIVAKQYCDNEMRILHNYYPQYNFSK
NKGYPVYEHYVAIKNYGICPSHRINMTQNVLDNPPEKPEANLSFKELGVIIKEISELLSVDRSLARDEFEYPFMRRQYSN
VILQGKLPSPKEQYHILRCARDIKDRAAKKFSSKF

Sequences:

>Translated_355_residues
MFSDDPQTSIEKMLRKACPFRGFAECLLEDCMSWSGSDCQMFSVNPMDGGISNGTAINPPVAIKTTGKKNKSKETFDEFI
TRVSKKRYAGIDEVGVSSIAGPMVAAVVVLPHDHNIPGIPRDSKEMTLKSIEEISSLIFEKADFWHIASISPKEIDDIGP
ELAREKLWMECANKVRSVFPKIRIIVDGKDKIPGFTKQNAVSKGDSIFSGVSAAAIVAKQYCDNEMRILHNYYPQYNFSK
NKGYPVYEHYVAIKNYGICPSHRINMTQNVLDNPPEKPEANLSFKELGVIIKEISELLSVDRSLARDEFEYPFMRRQYSN
VILQGKLPSPKEQYHILRCARDIKDRAAKKFSSKF
>Mature_355_residues
MFSDDPQTSIEKMLRKACPFRGFAECLLEDCMSWSGSDCQMFSVNPMDGGISNGTAINPPVAIKTTGKKNKSKETFDEFI
TRVSKKRYAGIDEVGVSSIAGPMVAAVVVLPHDHNIPGIPRDSKEMTLKSIEEISSLIFEKADFWHIASISPKEIDDIGP
ELAREKLWMECANKVRSVFPKIRIIVDGKDKIPGFTKQNAVSKGDSIFSGVSAAAIVAKQYCDNEMRILHNYYPQYNFSK
NKGYPVYEHYVAIKNYGICPSHRINMTQNVLDNPPEKPEANLSFKELGVIIKEISELLSVDRSLARDEFEYPFMRRQYSN
VILQGKLPSPKEQYHILRCARDIKDRAAKKFSSKF

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=177, Percent_Identity=35.5932203389831, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 40050; Mature: 40050

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSDDPQTSIEKMLRKACPFRGFAECLLEDCMSWSGSDCQMFSVNPMDGGISNGTAINPP
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCC
VAIKTTGKKNKSKETFDEFITRVSKKRYAGIDEVGVSSIAGPMVAAVVVLPHDHNIPGIP
EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCC
RDSKEMTLKSIEEISSLIFEKADFWHIASISPKEIDDIGPELAREKLWMECANKVRSVFP
CCHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
KIRIIVDGKDKIPGFTKQNAVSKGDSIFSGVSAAAIVAKQYCDNEMRILHNYYPQYNFSK
EEEEEECCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC
NKGYPVYEHYVAIKNYGICPSHRINMTQNVLDNPPEKPEANLSFKELGVIIKEISELLSV
CCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
DRSLARDEFEYPFMRRQYSNVILQGKLPSPKEQYHILRCARDIKDRAAKKFSSKF
HHHHHHHHHCCHHHHHHHHCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFSDDPQTSIEKMLRKACPFRGFAECLLEDCMSWSGSDCQMFSVNPMDGGISNGTAINPP
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCC
VAIKTTGKKNKSKETFDEFITRVSKKRYAGIDEVGVSSIAGPMVAAVVVLPHDHNIPGIP
EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCC
RDSKEMTLKSIEEISSLIFEKADFWHIASISPKEIDDIGPELAREKLWMECANKVRSVFP
CCHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
KIRIIVDGKDKIPGFTKQNAVSKGDSIFSGVSAAAIVAKQYCDNEMRILHNYYPQYNFSK
EEEEEECCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC
NKGYPVYEHYVAIKNYGICPSHRINMTQNVLDNPPEKPEANLSFKELGVIIKEISELLSV
CCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
DRSLARDEFEYPFMRRQYSNVILQGKLPSPKEQYHILRCARDIKDRAAKKFSSKF
HHHHHHHHHCCHHHHHHHHCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA