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The map label for this gene is ycjC [C]

Identifier: 134298740

GI number: 134298740

Start: 934741

End: 935361

Strand: Reverse

Name: ycjC [C]

Synonym: Dred_0874

Alternate gene names: 134298740

Gene position: 935361-934741 (Counterclockwise)

Preceding gene: 134298742

Following gene: 134298738

Centisome position: 25.92

GC content: 32.69

Gene sequence:

>621_bases
ATGAATTATGGGAAACGGGTTACATTTTTTCGTGAAAAATTAGGAATTAGTAAAAGAAAATTAGCAAAAATGATAGGTGT
AGATCCCTCATTAATAACAAAGATTGAAGCAAATAATACTAAGCCATCCTTAGATACTTTGGAGAGAATTTGCACTTCTT
TGGGAATCGAGCTTGCAGATTTTTTTGCAGAAGAATGCAAACAATTAAGAGTAGTATCAGATGATTTAAAATCATTAATA
TATGATTTAAGAGATCTTCGTTCTTCTCAATTATTAGCTATAAAAAAAATTATTTCTGAATTTAGATTAGTCAATCAATC
TATATCTAATACTTTAAGCAATGAGGTCTTGGACTTATTTAATTCAAAAGAAGCAATTACCATTGCTGGTAAGCCTATAT
CATTAGAAGAAAGAATTCAGATCCTAGAGGCTTTAAGAGATATCCTTTCCCAAGAAGAAACACCAACTAACGAAGATGAC
GAAGTTCTTGTAGCCAGCTACGAAGGTGACCAGTTATTTCATCTACCCACTCCAGAAGAGGCTGAAGACATTCAAAGGGC
TATAAAAGCAGCGATGGAGCAAAAGAGAAAAGACCAAAGCAATAATAACCAGTCAGAATAA

Upstream 100 bases:

>100_bases
TCAATATTTCAATAAAAATATTTATTTTAATTCAATAATTTTTAAAATTTCTTATTTAAGGTATAATTTACCTTGAATCA
AATTCAAAAGAGGTTCTATA

Downstream 100 bases:

>100_bases
AGAAACTACTAACCTTACATATAAGGTTAGTAGTTTCTTCAATTATCAGACAATACGACATTGTTAGATAAAATTCGAGC
ATTAACCACCAGTCAGGTGG

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator XRE Family; Prophage Repressor

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MNYGKRVTFFREKLGISKRKLAKMIGVDPSLITKIEANNTKPSLDTLERICTSLGIELADFFAEECKQLRVVSDDLKSLI
YDLRDLRSSQLLAIKKIISEFRLVNQSISNTLSNEVLDLFNSKEAITIAGKPISLEERIQILEALRDILSQEETPTNEDD
EVLVASYEGDQLFHLPTPEEAEDIQRAIKAAMEQKRKDQSNNNQSE

Sequences:

>Translated_206_residues
MNYGKRVTFFREKLGISKRKLAKMIGVDPSLITKIEANNTKPSLDTLERICTSLGIELADFFAEECKQLRVVSDDLKSLI
YDLRDLRSSQLLAIKKIISEFRLVNQSISNTLSNEVLDLFNSKEAITIAGKPISLEERIQILEALRDILSQEETPTNEDD
EVLVASYEGDQLFHLPTPEEAEDIQRAIKAAMEQKRKDQSNNNQSE
>Mature_206_residues
MNYGKRVTFFREKLGISKRKLAKMIGVDPSLITKIEANNTKPSLDTLERICTSLGIELADFFAEECKQLRVVSDDLKSLI
YDLRDLRSSQLLAIKKIISEFRLVNQSISNTLSNEVLDLFNSKEAITIAGKPISLEERIQILEALRDILSQEETPTNEDD
EVLVASYEGDQLFHLPTPEEAEDIQRAIKAAMEQKRKDQSNNNQSE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23388; Mature: 23388

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYGKRVTFFREKLGISKRKLAKMIGVDPSLITKIEANNTKPSLDTLERICTSLGIELAD
CCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHEEECCCCCCCHHHHHHHHHHHCHHHHH
FFAEECKQLRVVSDDLKSLIYDLRDLRSSQLLAIKKIISEFRLVNQSISNTLSNEVLDLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSKEAITIAGKPISLEERIQILEALRDILSQEETPTNEDDEVLVASYEGDQLFHLPTPEE
CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEECCCCCC
AEDIQRAIKAAMEQKRKDQSNNNQSE
HHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNYGKRVTFFREKLGISKRKLAKMIGVDPSLITKIEANNTKPSLDTLERICTSLGIELAD
CCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHEEECCCCCCCHHHHHHHHHHHCHHHHH
FFAEECKQLRVVSDDLKSLIYDLRDLRSSQLLAIKKIISEFRLVNQSISNTLSNEVLDLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSKEAITIAGKPISLEERIQILEALRDILSQEETPTNEDDEVLVASYEGDQLFHLPTPEE
CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEECCCCCC
AEDIQRAIKAAMEQKRKDQSNNNQSE
HHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA