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The map label for this gene is 134298373

Identifier: 134298373

GI number: 134298373

Start: 539310

End: 539711

Strand: Reverse

Name: 134298373

Synonym: Dred_0499

Alternate gene names: NA

Gene position: 539711-539310 (Counterclockwise)

Preceding gene: 134298374

Following gene: 134298370

Centisome position: 14.96

GC content: 48.51

Gene sequence:

>402_bases
ATGATTAAAGACCTGGTTCTCTGGCGGCTGGAGAAGGCCGAAAAGACCTTTGAGGATGCAGAGTTGTTGTTAGAAAGGGA
TTCCTTTGCCAGTGCCATCAACCGTTATTATTACGCTGCCTTCTATGCCATCCGGGCCTTGTTGGCCACCAGAGAGCTAG
ATTCCCCCAAGCATAGCGGCGTCATTTCTTTGTTTAATCGGGAGTTTATCAAGACAAACCTTCTTAGCAAAAAGGCTTCT
AAAACCATCACCAAAGTCTTTGATTTGCGTTCTAACGTGAAACTGAGCACCCCGCACCCGAAGTCTGACCGGCAGATGGG
AGCGGGGTTATTCAGTTGTCGGCGAATTTCTACACCAGGGCAGCCAATATGGTGGATTTCCCGGCATTGTTATGGCCGAT
AA

Upstream 100 bases:

>100_bases
TGTTTATTTCCATTGTGCTAAAAAGCCAAAATGAATTTACCTACCCTATCTTTCGCCAGAGTCTCTTCTTCCGTAATCTG
CAGGAAGAAGGTGTGCGTTT

Downstream 100 bases:

>100_bases
AAAAATTCACCTTATCTAGCAACAAATCAGTATCTATATGATTACGGAAATTTTGTACCCCTAGCTTCTTGATTTTCATG
GGTCAAGCCTCCATAATAAT

Product: HEPN domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MIKDLVLWRLEKAEKTFEDAELLLERDSFASAINRYYYAAFYAIRALLATRELDSPKHSGVISLFNREFIKTNLLSKKAS
KTITKVFDLRSNVKLSTPHPKSDRQMGAGLFSCRRISTPGQPIWWISRHCYGR

Sequences:

>Translated_133_residues
MIKDLVLWRLEKAEKTFEDAELLLERDSFASAINRYYYAAFYAIRALLATRELDSPKHSGVISLFNREFIKTNLLSKKAS
KTITKVFDLRSNVKLSTPHPKSDRQMGAGLFSCRRISTPGQPIWWISRHCYGR
>Mature_133_residues
MIKDLVLWRLEKAEKTFEDAELLLERDSFASAINRYYYAAFYAIRALLATRELDSPKHSGVISLFNREFIKTNLLSKKAS
KTITKVFDLRSNVKLSTPHPKSDRQMGAGLFSCRRISTPGQPIWWISRHCYGR

Specific function: Unknown

COG id: COG1895

COG function: function code S; Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0332 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007842 [H]

Pfam domain/function: PF05168 HEPN [H]

EC number: NA

Molecular weight: Translated: 15399; Mature: 15399

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKDLVLWRLEKAEKTFEDAELLLERDSFASAINRYYYAAFYAIRALLATRELDSPKHSG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VISLFNREFIKTNLLSKKASKTITKVFDLRSNVKLSTPHPKSDRQMGAGLFSCRRISTPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHCCCCCC
QPIWWISRHCYGR
CCEEHHHHHCCCC
>Mature Secondary Structure
MIKDLVLWRLEKAEKTFEDAELLLERDSFASAINRYYYAAFYAIRALLATRELDSPKHSG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VISLFNREFIKTNLLSKKASKTITKVFDLRSNVKLSTPHPKSDRQMGAGLFSCRRISTPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHCCCCCC
QPIWWISRHCYGR
CCEEHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]