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The map label for this gene is intR [C]

Identifier: 134297899

GI number: 134297899

Start: 26734

End: 27900

Strand: Reverse

Name: intR [C]

Synonym: Dred_0018

Alternate gene names: 134297899

Gene position: 27900-26734 (Counterclockwise)

Preceding gene: 134297900

Following gene: 134297897

Centisome position: 0.77

GC content: 41.3

Gene sequence:

>1167_bases
ATGGCCACAATTAAGTTTAACGAAAAGAAAGGATATTATGAAGTACGCTATGATGCTGGATTTGATGGAAACGGGAAAAG
GATACAAAAATATAAGGGAGGCTTCAAAAAAGAGAGAGATGCAAAACTCTTTGCTGCTCAACTTACAGTAAACATCAGTC
AAGGAACACACATAGAGCCTAATAAAATGTTTTTATTTGAATACCTTAATAACTGGCTAGAGGAGAAAAAGGAAACTATC
TCACCGACATCCTATTGTGGGTACGAAGTTAACATCCGGTGCCATATAAATCCCTACATCGGCGGAATCAAACTTTCGGA
TTTAAGGGCTGCCCATATCAGAGGGTTATATTCCAAGCTGCAAAAGGCCAGGGAAATTAAAATTGATGGGGAAAAGAGAT
CCTTCAAGCCTCTGTCCGGCACCTCTATTCGTTATGTCCACAGAGTGCTGTCTAAGGCTTTAGAAGATGCTTACAGGGAA
GAAACAATACCAAAAAATCCAGCTAAACTGGTTACCCCTCCAACCAAAAACAAATTTGAAGCAGGTTTTCTGTCAACCAA
GCAGATTAGGGAAATGTTGGATAAACTCCGGGAAGATGCCTTGTACATGCCGGTGTATTTATCCGTGGTCCTGGGGGCCC
GTCGTGGGGAAGTCTTAGGACTGCAATGGTCCGATGTAGACATGGAAAACAAATTAATTCATATTCGTCACAATTTAATA
ATGGATAATGGTAATCCTGTGTTGAGAGAAAAAACTAAAACTGATTCTTCTAACAGGGTTATCGTGGTAACAGACAGATT
AATCAAAGCATTAAAGGAACATAAGCTAAAGCTAAAGCAAAAAGAAATGAAACTCCAGCATGGCCAACTATATCATAAGT
CAGACTTTGTTTGCACCTGGCCTGATGGGAAACCCTTTAACCCGTCACATTTATCCAGGTCCTTCAGCTTACGGCTGCAA
AAATATGGGCTGCCTAATATAAGATTCCACGATCTACGCCACTCGAACGCTGCCTTAATGATCGCACAAAACGTCCCCAT
GAAAGGGGCCAGTGACAGGTTAGGGCACAGCACTATTCAAATCACTAATGATCTTTATGGTCACACCGAACGGTCAGTGC
AGGAAGAAATTGCAATTAAAATCGATCAAGCCATCTGGGGAAGCTAA

Upstream 100 bases:

>100_bases
ATTATTAGATTGAACCTGAAAGCATATTTTTTTACCCCTTTGGCAGAACATATGTTTTTGCCAAGGTTTATTTCTATTAA
CTAATGAAAGGAGGTAAAGC

Downstream 100 bases:

>100_bases
GGCGCACAACTTTTTGTGAAATGACACTCGATTTATGTGAAATGAATTTATGATTTGAGAAATTTTATGTGAAATGGCAT
GAAAAAACCGCCTTACTTTA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MATIKFNEKKGYYEVRYDAGFDGNGKRIQKYKGGFKKERDAKLFAAQLTVNISQGTHIEPNKMFLFEYLNNWLEEKKETI
SPTSYCGYEVNIRCHINPYIGGIKLSDLRAAHIRGLYSKLQKAREIKIDGEKRSFKPLSGTSIRYVHRVLSKALEDAYRE
ETIPKNPAKLVTPPTKNKFEAGFLSTKQIREMLDKLREDALYMPVYLSVVLGARRGEVLGLQWSDVDMENKLIHIRHNLI
MDNGNPVLREKTKTDSSNRVIVVTDRLIKALKEHKLKLKQKEMKLQHGQLYHKSDFVCTWPDGKPFNPSHLSRSFSLRLQ
KYGLPNIRFHDLRHSNAALMIAQNVPMKGASDRLGHSTIQITNDLYGHTERSVQEEIAIKIDQAIWGS

Sequences:

>Translated_388_residues
MATIKFNEKKGYYEVRYDAGFDGNGKRIQKYKGGFKKERDAKLFAAQLTVNISQGTHIEPNKMFLFEYLNNWLEEKKETI
SPTSYCGYEVNIRCHINPYIGGIKLSDLRAAHIRGLYSKLQKAREIKIDGEKRSFKPLSGTSIRYVHRVLSKALEDAYRE
ETIPKNPAKLVTPPTKNKFEAGFLSTKQIREMLDKLREDALYMPVYLSVVLGARRGEVLGLQWSDVDMENKLIHIRHNLI
MDNGNPVLREKTKTDSSNRVIVVTDRLIKALKEHKLKLKQKEMKLQHGQLYHKSDFVCTWPDGKPFNPSHLSRSFSLRLQ
KYGLPNIRFHDLRHSNAALMIAQNVPMKGASDRLGHSTIQITNDLYGHTERSVQEEIAIKIDQAIWGS
>Mature_387_residues
ATIKFNEKKGYYEVRYDAGFDGNGKRIQKYKGGFKKERDAKLFAAQLTVNISQGTHIEPNKMFLFEYLNNWLEEKKETIS
PTSYCGYEVNIRCHINPYIGGIKLSDLRAAHIRGLYSKLQKAREIKIDGEKRSFKPLSGTSIRYVHRVLSKALEDAYREE
TIPKNPAKLVTPPTKNKFEAGFLSTKQIREMLDKLREDALYMPVYLSVVLGARRGEVLGLQWSDVDMENKLIHIRHNLIM
DNGNPVLREKTKTDSSNRVIVVTDRLIKALKEHKLKLKQKEMKLQHGQLYHKSDFVCTWPDGKPFNPSHLSRSFSLRLQK
YGLPNIRFHDLRHSNAALMIAQNVPMKGASDRLGHSTIQITNDLYGHTERSVQEEIAIKIDQAIWGS

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44657; Mature: 44526

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIKFNEKKGYYEVRYDAGFDGNGKRIQKYKGGFKKERDAKLFAAQLTVNISQGTHIEP
CCEEEEECCCCEEEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEEEEEEEEECCCCEECC
NKMFLFEYLNNWLEEKKETISPTSYCGYEVNIRCHINPYIGGIKLSDLRAAHIRGLYSKL
CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCEEECCHHHHHHHHHHHHH
QKAREIKIDGEKRSFKPLSGTSIRYVHRVLSKALEDAYREETIPKNPAKLVTPPTKNKFE
HHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCC
AGFLSTKQIREMLDKLREDALYMPVYLSVVLGARRGEVLGLQWSDVDMENKLIHIRHNLI
CCCCCHHHHHHHHHHHHHCCEEHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEEEEE
MDNGNPVLREKTKTDSSNRVIVVTDRLIKALKEHKLKLKQKEMKLQHGQLYHKSDFVCTW
EECCCEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEC
PDGKPFNPSHLSRSFSLRLQKYGLPNIRFHDLRHSNAALMIAQNVPMKGASDRLGHSTIQ
CCCCCCCHHHHCHHHEEEEHCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEE
ITNDLYGHTERSVQEEIAIKIDQAIWGS
EECHHCCCCHHHHHHHHHEEEHHHHCCC
>Mature Secondary Structure 
ATIKFNEKKGYYEVRYDAGFDGNGKRIQKYKGGFKKERDAKLFAAQLTVNISQGTHIEP
CEEEEECCCCEEEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEEEEEEEEECCCCEECC
NKMFLFEYLNNWLEEKKETISPTSYCGYEVNIRCHINPYIGGIKLSDLRAAHIRGLYSKL
CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCEEECCHHHHHHHHHHHHH
QKAREIKIDGEKRSFKPLSGTSIRYVHRVLSKALEDAYREETIPKNPAKLVTPPTKNKFE
HHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCC
AGFLSTKQIREMLDKLREDALYMPVYLSVVLGARRGEVLGLQWSDVDMENKLIHIRHNLI
CCCCCHHHHHHHHHHHHHCCEEHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEEEEE
MDNGNPVLREKTKTDSSNRVIVVTDRLIKALKEHKLKLKQKEMKLQHGQLYHKSDFVCTW
EECCCEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEC
PDGKPFNPSHLSRSFSLRLQKYGLPNIRFHDLRHSNAALMIAQNVPMKGASDRLGHSTIQ
CCCCCCCHHHHCHHHEEEEHCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEE
ITNDLYGHTERSVQEEIAIKIDQAIWGS
EECHHCCCCHHHHHHHHHEEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]