| Definition | Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome. |
|---|---|
| Accession | NC_002162 |
| Length | 751,719 |
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Identifier: 13357855
GI number: 13357855
Start: 338652
End: 339362
Strand: Direct
Name: Not Available
Synonym: UU295
Alternate gene names: 13357855
Gene position: 338652-339362 (Clockwise)
Preceding gene: 13357854
Following gene: 13357856
Centisome position: 45.05
GC content: 29.4
Gene sequence:
>711_bases ATGCCAAGAAAACATTTAATCGCTAGTGGAATTAATAAGAAACAACAACAACAAGCTAAAATTTGAATGAAATGTGCAAA AGAAATTAAAGCTGCCGCAAAAATGGGTGGTCCTAACCCAGAGGCAAATTCGCGTTTAAAAGTTGCTATTGAACGCGCTT TAAATAATAATTTGAGTCGTGATTCAATTGAACGAAACATTAATGGTGCCAGTAAAGATATTGATAATTTAAAAGAATTA ACATACGAAGGATATGGACCAAATGGATTAGCAATTATTGTTCGTGCTTTAACTGATAATGAGCAGCGGACAATATCAGC TATTCGTGGTTATTTTTCGAAATTACAAGGTCAGATTGCTAAACCTAATTCTGTTAGTATGTTGTTTAATGAATGTGGAC AGTTATTAATTAATAAAGAAACTAAATCTTTAGATGAATGATTTGAAATTCTTATTGATCAAAGTATTATAGATATAAAT GAAGATGATAAAATTATTGAAATATTAGTTAAGCCAGAAGATTTTAGCACAGTAAAATTAATTCTTGAAAAAAATAATGC TGATATAAAAAGTGCGGAAATCAAACTTATTCCTAATGATTTCATTAGTTTAGACGAATATGCTCGCGAACGTTTAGTAC GTTTTGTAAATGCTTGTGAAAACGATGATGATATTTCATGAGTAATTACGAATTACGAAGAAGAATTATAA
Upstream 100 bases:
>100_bases TAATATATTTTTATATCAATATTATAATGAAGGTATAAAAAACGATATTGATTTTTTAAATCATTTTTTATTAAAAGATG CACTAAAATAGGAGAAAGAT
Downstream 100 bases:
>100_bases TGTCAAATATTGATGTAAAAACTAATTTTTGAAAATTAAATCAAAAGAATAAAAAGATTTTATTTCGTGTGCTTGGATAT TCTAGTTTATCAGTTACTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 236; Mature: 235
Protein sequence:
>236_residues MPRKHLIASGINKKQQQQAKIWMKCAKEIKAAAKMGGPNPEANSRLKVAIERALNNNLSRDSIERNINGASKDIDNLKEL TYEGYGPNGLAIIVRALTDNEQRTISAIRGYFSKLQGQIAKPNSVSMLFNECGQLLINKETKSLDEWFEILIDQSIIDIN EDDKIIEILVKPEDFSTVKLILEKNNADIKSAEIKLIPNDFISLDEYARERLVRFVNACENDDDISWVITNYEEEL
Sequences:
>Translated_236_residues MPRKHLIASGINKKQQQQAKI*MKCAKEIKAAAKMGGPNPEANSRLKVAIERALNNNLSRDSIERNINGASKDIDNLKEL TYEGYGPNGLAIIVRALTDNEQRTISAIRGYFSKLQGQIAKPNSVSMLFNECGQLLINKETKSLDE*FEILIDQSIIDIN EDDKIIEILVKPEDFSTVKLILEKNNADIKSAEIKLIPNDFISLDEYARERLVRFVNACENDDDIS*VITNYEEEL >Mature_235_residues PRKHLIASGINKKQQQQAKI*MKCAKEIKAAAKMGGPNPEANSRLKVAIERALNNNLSRDSIERNINGASKDIDNLKELT YEGYGPNGLAIIVRALTDNEQRTISAIRGYFSKLQGQIAKPNSVSMLFNECGQLLINKETKSLDE*FEILIDQSIIDINE DDKIIEILVKPEDFSTVKLILEKNNADIKSAEIKLIPNDFISLDEYARERLVRFVNACENDDDIS*VITNYEEEL
Specific function: Unknown
COG id: COG0217
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TACO1 family [H]
Homologues:
Organism=Escherichia coli, GI1788171, Length=220, Percent_Identity=34.5454545454545, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1788294, Length=205, Percent_Identity=33.6585365853659, Blast_Score=100, Evalue=6e-23, Organism=Saccharomyces cerevisiae, GI6321458, Length=239, Percent_Identity=30.1255230125523, Blast_Score=72, Evalue=9e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002876 - InterPro: IPR017856 [H]
Pfam domain/function: PF01709 DUF28 [H]
EC number: NA
Molecular weight: Translated: 26169; Mature: 26038
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRKHLIASGINKKQQQQAKIMKCAKEIKAAAKMGGPNPEANSRLKVAIERALNNNLSRD CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHH SIERNINGASKDIDNLKELTYEGYGPNGLAIIVRALTDNEQRTISAIRGYFSKLQGQIAK HHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEHHCCCHHHHHHHHHHHHHHHCCCCCC PNSVSMLFNECGQLLINKETKSLDEFEILIDQSIIDINEDDKIIEILVKPEDFSTVKLIL CCHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHEECCCCCCCEEEEEECCCCCCEEEEEE EKNNADIKSAEIKLIPNDFISLDEYARERLVRFVNACENDDDISVITNYEEEL ECCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHCC >Mature Secondary Structure PRKHLIASGINKKQQQQAKIMKCAKEIKAAAKMGGPNPEANSRLKVAIERALNNNLSRD CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHH SIERNINGASKDIDNLKELTYEGYGPNGLAIIVRALTDNEQRTISAIRGYFSKLQGQIAK HHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEHHCCCHHHHHHHHHHHHHHHCCCCCC PNSVSMLFNECGQLLINKETKSLDEFEILIDQSIIDINEDDKIIEILVKPEDFSTVKLIL CCHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHEECCCCCCCEEEEEECCCCCCEEEEEE EKNNADIKSAEIKLIPNDFISLDEYARERLVRFVNACENDDDISVITNYEEEL ECCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA