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The map label for this gene is yvoA [H]

Identifier: 126701075

GI number: 126701075

Start: 4044971

End: 4045696

Strand: Direct

Name: yvoA [H]

Synonym: CD3452

Alternate gene names: 126701075

Gene position: 4044971-4045696 (Clockwise)

Preceding gene: 126701073

Following gene: 126701076

Centisome position: 94.28

GC content: 31.13

Gene sequence:

>726_bases
ATGATAAAAAGAAATGATAAAAGACCAATATATGACCAGCTTGTTGAGATATTAAGAACTAAGATTGAAAATGAGATGGA
ACCAAACGATAGAATGCTTTCCGAAAGAAAAATTTGTGATGAATATGGAGTAAGTAGAACCACAGTTAGACTAGCTATGG
CTGAGTTGGAACATATGGGATATATATACAAAAGACATGGAAAAGGAACTTTTGTTGCTGCACTAAGTCAAAATTCTCAA
AACTTAATGGAAAGTTATAGTTTTACAGATTATATGAGAACACAAGGAAAAAAGCCAGGTACAAAGGTATTATCATTTGA
GGTAGTAGAAAGTACAAAGTATTTCTCTGAAAAATTAGGTATAACTACTGGTGAAAAAATGATAAAAATAATGCGTTTAA
GACTTGCTGATGACCTTCCTATGATGCTTGAAAGAACATATCTTCCTATGAAAGAATTTATAGGATTGACAAAAGAAAAA
ATCGAACAAAAACCTTTATATGAAATATTTAGAGAAGATTATGGCGAGATTATTAAAGTCGCTGATGAAGAATTTTCAGC
TGGAATAATCTCTGATAAGGAAGCTAAGTTATTGGAAGTACCAGGAGATTCACCTTGTCTGAAATTACTTCGTACCACAT
ATAATGATGACAATATAGTTATTGAATTTACTTTGAGTGTCGCTAGAAGCGATAAATTTGTATATAGAGTAAGACATGTA
AGATAG

Upstream 100 bases:

>100_bases
TACTTATTGAATTTTGATTAAACTTTATTCATTGACATAAATAATTCTATATTCTATAATCAAATTGTGGTAATAACCAC
TTAGAAAGGACTATATTTTT

Downstream 100 bases:

>100_bases
TAAGTTAAATAGCTTTCAAGAAAATAGAATGATATTATAAACGTCAATGCCACAATGATAGTATAATTATAAGGAGGTTA
TTTTGAAAAGTTTTATTTAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MIKRNDKRPIYDQLVEILRTKIENEMEPNDRMLSERKICDEYGVSRTTVRLAMAELEHMGYIYKRHGKGTFVAALSQNSQ
NLMESYSFTDYMRTQGKKPGTKVLSFEVVESTKYFSEKLGITTGEKMIKIMRLRLADDLPMMLERTYLPMKEFIGLTKEK
IEQKPLYEIFREDYGEIIKVADEEFSAGIISDKEAKLLEVPGDSPCLKLLRTTYNDDNIVIEFTLSVARSDKFVYRVRHV
R

Sequences:

>Translated_241_residues
MIKRNDKRPIYDQLVEILRTKIENEMEPNDRMLSERKICDEYGVSRTTVRLAMAELEHMGYIYKRHGKGTFVAALSQNSQ
NLMESYSFTDYMRTQGKKPGTKVLSFEVVESTKYFSEKLGITTGEKMIKIMRLRLADDLPMMLERTYLPMKEFIGLTKEK
IEQKPLYEIFREDYGEIIKVADEEFSAGIISDKEAKLLEVPGDSPCLKLLRTTYNDDNIVIEFTLSVARSDKFVYRVRHV
R
>Mature_241_residues
MIKRNDKRPIYDQLVEILRTKIENEMEPNDRMLSERKICDEYGVSRTTVRLAMAELEHMGYIYKRHGKGTFVAALSQNSQ
NLMESYSFTDYMRTQGKKPGTKVLSFEVVESTKYFSEKLGITTGEKMIKIMRLRLADDLPMMLERTYLPMKEFIGLTKEK
IEQKPLYEIFREDYGEIIKVADEEFSAGIISDKEAKLLEVPGDSPCLKLLRTTYNDDNIVIEFTLSVARSDKFVYRVRHV
R

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=229, Percent_Identity=25.764192139738, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790118, Length=220, Percent_Identity=25.4545454545455, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI87082252, Length=216, Percent_Identity=23.6111111111111, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1790540, Length=239, Percent_Identity=23.4309623430962, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788418, Length=244, Percent_Identity=24.5901639344262, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28154; Mature: 28154

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKRNDKRPIYDQLVEILRTKIENEMEPNDRMLSERKICDEYGVSRTTVRLAMAELEHMG
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
YIYKRHGKGTFVAALSQNSQNLMESYSFTDYMRTQGKKPGTKVLSFEVVESTKYFSEKLG
HHHEECCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHCC
ITTGEKMIKIMRLRLADDLPMMLERTYLPMKEFIGLTKEKIEQKPLYEIFREDYGEIIKV
CCCHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHH
ADEEFSAGIISDKEAKLLEVPGDSPCLKLLRTTYNDDNIVIEFTLSVARSDKFVYRVRHV
HHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEHHHCCHHHHHEECC
R
C
>Mature Secondary Structure
MIKRNDKRPIYDQLVEILRTKIENEMEPNDRMLSERKICDEYGVSRTTVRLAMAELEHMG
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
YIYKRHGKGTFVAALSQNSQNLMESYSFTDYMRTQGKKPGTKVLSFEVVESTKYFSEKLG
HHHEECCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHCC
ITTGEKMIKIMRLRLADDLPMMLERTYLPMKEFIGLTKEKIEQKPLYEIFREDYGEIIKV
CCCHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHH
ADEEFSAGIISDKEAKLLEVPGDSPCLKLLRTTYNDDNIVIEFTLSVARSDKFVYRVRHV
HHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEHHHCCHHHHHEECC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]