| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126700869
Identifier: 126700869
GI number: 126700869
Start: 3804694
End: 3805239
Strand: Direct
Name: 126700869
Synonym: CD3250
Alternate gene names: NA
Gene position: 3804694-3805239 (Clockwise)
Preceding gene: 126700868
Following gene: 126700871
Centisome position: 88.68
GC content: 26.92
Gene sequence:
>546_bases ATGATATTTATGTTTGAAAACTCGTCTGAAGAATTAGCCTATCACAAACTTTTAATTTTATATATATTAGAAAAAATTAA AATGGATTTAACTAATTCTCAAATAACTCAAGTAGTATTAGAGACTGAGATGATGAATTATTTTTCATTACAACAGCTTT TATCTCAGCTTATGGAATCTAAGTTTTTGACTACATATAAAGACTCTGACAGAGAATATTATGCTCTTACTCAAAGAGGC GTAGAAAGTCTAGAATACTTCTTTAATCGAATACCTACTAGTGTTACTGAAAAAATAGACAAGTATATAGATTCTAACAA AGAAAATCTACTAGCAGATACTCAAGTAAAGTCTAGTTTTGTAAAACAAAGTGATAATGAATTTATTGTCAACCTTAGAG TCATAGAAAATCAGTCTAACTTAATAGATTTAAATCTAAATGTTTCATCAGAGAAACAAGCAAAACTTATTTGCAATAAC TGGAAAAATAATGCATCTTATATGTATGCCGAAGTTATCGATTTACTTATAAGAGACATACATTAA
Upstream 100 bases:
>100_bases TTATATGAATTATTAAAGATTAATAATACAATACAAATTGTTCTTTTAATTTTGTACAAATTAGTTTAATATATTATATA TAGAAATAGTTTGACGGAGG
Downstream 100 bases:
>100_bases AGCCTACAAACAAATTATAGTTGTAGGCTCTTTTCCTACCTTGATTTCTTTTATTAATTTGTTATTTGCAGTTTCATAAA CTTTTACTGAATTTTCTTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 181; Mature: 181
Protein sequence:
>181_residues MIFMFENSSEELAYHKLLILYILEKIKMDLTNSQITQVVLETEMMNYFSLQQLLSQLMESKFLTTYKDSDREYYALTQRG VESLEYFFNRIPTSVTEKIDKYIDSNKENLLADTQVKSSFVKQSDNEFIVNLRVIENQSNLIDLNLNVSSEKQAKLICNN WKNNASYMYAEVIDLLIRDIH
Sequences:
>Translated_181_residues MIFMFENSSEELAYHKLLILYILEKIKMDLTNSQITQVVLETEMMNYFSLQQLLSQLMESKFLTTYKDSDREYYALTQRG VESLEYFFNRIPTSVTEKIDKYIDSNKENLLADTQVKSSFVKQSDNEFIVNLRVIENQSNLIDLNLNVSSEKQAKLICNN WKNNASYMYAEVIDLLIRDIH >Mature_181_residues MIFMFENSSEELAYHKLLILYILEKIKMDLTNSQITQVVLETEMMNYFSLQQLLSQLMESKFLTTYKDSDREYYALTQRG VESLEYFFNRIPTSVTEKIDKYIDSNKENLLADTQVKSSFVKQSDNEFIVNLRVIENQSNLIDLNLNVSSEKQAKLICNN WKNNASYMYAEVIDLLIRDIH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21343; Mature: 21343
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIFMFENSSEELAYHKLLILYILEKIKMDLTNSQITQVVLETEMMNYFSLQQLLSQLMES CEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KFLTTYKDSDREYYALTQRGVESLEYFFNRIPTSVTEKIDKYIDSNKENLLADTQVKSSF HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH VKQSDNEFIVNLRVIENQSNLIDLNLNVSSEKQAKLICNNWKNNASYMYAEVIDLLIRDI HHCCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHC H C >Mature Secondary Structure MIFMFENSSEELAYHKLLILYILEKIKMDLTNSQITQVVLETEMMNYFSLQQLLSQLMES CEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KFLTTYKDSDREYYALTQRGVESLEYFFNRIPTSVTEKIDKYIDSNKENLLADTQVKSSF HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH VKQSDNEFIVNLRVIENQSNLIDLNLNVSSEKQAKLICNNWKNNASYMYAEVIDLLIRDI HHCCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHC H C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA