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The map label for this gene is intF [C]

Identifier: 126700774

GI number: 126700774

Start: 3684846

End: 3686012

Strand: Direct

Name: intF [C]

Synonym: CD3156

Alternate gene names: 126700774

Gene position: 3684846-3686012 (Clockwise)

Preceding gene: 126700773

Following gene: 126700777

Centisome position: 85.89

GC content: 27.42

Gene sequence:

>1167_bases
ATGGCAACTAAAAGAGCTAATGGAGAAGGCTCTATCGGAAAATATAAAGATGGTTGGCGTTCCCGTATAATGATTGGCTA
TAATGAAGATGGTAAACCACTGAGAAAAGAATTTTATGGTAAGACTCAAAAGGAAGTTAAAGATAAATTAGATGCTTATA
AAAAACAATATTATTTAAGCTCTGATATTTCAGATGATAAAATAACTTTAGAGCATTGGTTTTACAATTGGTTATTTGAA
TATAGAATAAAAGATTTAAAACCCAAGTCATTTGAAAGATATGAAAGCATCTATCGTAATTATATTAAAGATACTGATTT
AGGCAATGTTAAATTAAAGTACTTAAGAGTATCTCACATACAAAAATATTACAATAGATTGCTTGATTCCAATAAAAGTA
TACCTACTATAAGGCAAATAAACACTAAACTGAAAACCTGCTTATCAGAAGCTGAAAAACAAGGTCTTATACAACGTAAC
TATTGTACTATGGTAAATATACCAGTTGAGAAAAAAGAAAACAAACTTGAAATATTGACTCTTGAACAACAAAAGAGTTT
TATAAAAGCTATAGATGGGCATAAATTAGAGGTATTATTTTTACTTGCTCTTGGTACTGGACTTAGATTAGGAGAATTAT
TAGGACTTAAATGGTTTGATATTGATTTTAAAAAGTCTAATTTAACAGTTAAAAGAACTCTTCAAAGAACATATTTTATA
GATAAAACTGGAAATAGAGAGCTTAAAGTATTAGAGCAAGGGCCAAAGACATCAAATTCTTACAGAACTGTACCTATTCC
AAAAGATGTTTTAAATAAATTGAAAGAGCATAAAGTAAATCAAAATACAGATATATTAAAGGCTGGAGAATTATATATAA
ATAATAATTATGTATTTTGCAATGAATTAGGCATCCCTATAGATGATAAAAGACCTTTAAGGAATTTAAAGTCTATATTA
AATAGCTTAAATATAGAGCCTATAAAGTTTCATGGTCTTAGGAAAACTTATGCTACTAGACTTTTTGAGAATGATGTTCC
TCCTAAAACTGTACAAGTTTTAATGGGTCATTATGATATATCAATAACTTTGAATATATATACTCAAGTTATGGAAGATA
AGAAAGTTGAAGCTGTAGAAAAGTTGGATAAAATATTTTCATTGTAA

Upstream 100 bases:

>100_bases
GAAACACTAGAAGCTGATGAAGTTATAAAATTCTTATTAGAGAAATGTATTACATTCTTTGATGGATATAACTATAAATC
ATATAAGGAGCTGTTTAAAA

Downstream 100 bases:

>100_bases
AAATCAAATACATATAAATATTGTGATTTCATATAGTTAATTACAAAATCAAAATAAGGATACAAATTAATTTTATATTA
TATTGTATCCTTATTTCGTA

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MATKRANGEGSIGKYKDGWRSRIMIGYNEDGKPLRKEFYGKTQKEVKDKLDAYKKQYYLSSDISDDKITLEHWFYNWLFE
YRIKDLKPKSFERYESIYRNYIKDTDLGNVKLKYLRVSHIQKYYNRLLDSNKSIPTIRQINTKLKTCLSEAEKQGLIQRN
YCTMVNIPVEKKENKLEILTLEQQKSFIKAIDGHKLEVLFLLALGTGLRLGELLGLKWFDIDFKKSNLTVKRTLQRTYFI
DKTGNRELKVLEQGPKTSNSYRTVPIPKDVLNKLKEHKVNQNTDILKAGELYINNNYVFCNELGIPIDDKRPLRNLKSIL
NSLNIEPIKFHGLRKTYATRLFENDVPPKTVQVLMGHYDISITLNIYTQVMEDKKVEAVEKLDKIFSL

Sequences:

>Translated_388_residues
MATKRANGEGSIGKYKDGWRSRIMIGYNEDGKPLRKEFYGKTQKEVKDKLDAYKKQYYLSSDISDDKITLEHWFYNWLFE
YRIKDLKPKSFERYESIYRNYIKDTDLGNVKLKYLRVSHIQKYYNRLLDSNKSIPTIRQINTKLKTCLSEAEKQGLIQRN
YCTMVNIPVEKKENKLEILTLEQQKSFIKAIDGHKLEVLFLLALGTGLRLGELLGLKWFDIDFKKSNLTVKRTLQRTYFI
DKTGNRELKVLEQGPKTSNSYRTVPIPKDVLNKLKEHKVNQNTDILKAGELYINNNYVFCNELGIPIDDKRPLRNLKSIL
NSLNIEPIKFHGLRKTYATRLFENDVPPKTVQVLMGHYDISITLNIYTQVMEDKKVEAVEKLDKIFSL
>Mature_387_residues
ATKRANGEGSIGKYKDGWRSRIMIGYNEDGKPLRKEFYGKTQKEVKDKLDAYKKQYYLSSDISDDKITLEHWFYNWLFEY
RIKDLKPKSFERYESIYRNYIKDTDLGNVKLKYLRVSHIQKYYNRLLDSNKSIPTIRQINTKLKTCLSEAEKQGLIQRNY
CTMVNIPVEKKENKLEILTLEQQKSFIKAIDGHKLEVLFLLALGTGLRLGELLGLKWFDIDFKKSNLTVKRTLQRTYFID
KTGNRELKVLEQGPKTSNSYRTVPIPKDVLNKLKEHKVNQNTDILKAGELYINNNYVFCNELGIPIDDKRPLRNLKSILN
SLNIEPIKFHGLRKTYATRLFENDVPPKTVQVLMGHYDISITLNIYTQVMEDKKVEAVEKLDKIFSL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45546; Mature: 45415

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKRANGEGSIGKYKDGWRSRIMIGYNEDGKPLRKEFYGKTQKEVKDKLDAYKKQYYLS
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCC
SDISDDKITLEHWFYNWLFEYRIKDLKPKSFERYESIYRNYIKDTDLGNVKLKYLRVSHI
CCCCCCEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHH
QKYYNRLLDSNKSIPTIRQINTKLKTCLSEAEKQGLIQRNYCTMVNIPVEKKENKLEILT
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCCCEEEEE
LEQQKSFIKAIDGHKLEVLFLLALGTGLRLGELLGLKWFDIDFKKSNLTVKRTLQRTYFI
EHHHHHHHHHHCCCCCCEEEEEHHCCCCCHHHHHCCEEEEEEECCCCCHHHHHHHHHEEE
DKTGNRELKVLEQGPKTSNSYRTVPIPKDVLNKLKEHKVNQNTDILKAGELYINNNYVFC
ECCCCCEEEEEECCCCCCCCEEECCCCHHHHHHHHHCCCCCCCCEEEECEEEEECCEEEE
NELGIPIDDKRPLRNLKSILNSLNIEPIKFHGLRKTYATRLFENDVPPKTVQVLMGHYDI
ECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHHCCEEE
SITLNIYTQVMEDKKVEAVEKLDKIFSL
EEEEEEHHHHHHCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATKRANGEGSIGKYKDGWRSRIMIGYNEDGKPLRKEFYGKTQKEVKDKLDAYKKQYYLS
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCC
SDISDDKITLEHWFYNWLFEYRIKDLKPKSFERYESIYRNYIKDTDLGNVKLKYLRVSHI
CCCCCCEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHH
QKYYNRLLDSNKSIPTIRQINTKLKTCLSEAEKQGLIQRNYCTMVNIPVEKKENKLEILT
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCCCEEEEE
LEQQKSFIKAIDGHKLEVLFLLALGTGLRLGELLGLKWFDIDFKKSNLTVKRTLQRTYFI
EHHHHHHHHHHCCCCCCEEEEEHHCCCCCHHHHHCCEEEEEEECCCCCHHHHHHHHHEEE
DKTGNRELKVLEQGPKTSNSYRTVPIPKDVLNKLKEHKVNQNTDILKAGELYINNNYVFC
ECCCCCEEEEEECCCCCCCCEEECCCCHHHHHHHHHCCCCCCCCEEEECEEEEECCEEEE
NELGIPIDDKRPLRNLKSILNSLNIEPIKFHGLRKTYATRLFENDVPPKTVQVLMGHYDI
ECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHHCCEEE
SITLNIYTQVMEDKKVEAVEKLDKIFSL
EEEEEEHHHHHHCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]