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The map label for this gene is yciR [C]

Identifier: 126700489

GI number: 126700489

Start: 3360414

End: 3362693

Strand: Direct

Name: yciR [C]

Synonym: CD2873

Alternate gene names: 126700489

Gene position: 3360414-3362693 (Clockwise)

Preceding gene: 126700488

Following gene: 126700495

Centisome position: 78.33

GC content: 27.72

Gene sequence:

>2280_bases
ATGAACTTTGAAAACACAAAAAATAAAAAAATAATAGCTACTTTACTATTGACACTTCTTTTAATCGTGTCATTAACATG
TGTCACTTTTATTATGAATCTAAATAAAGTAACACATAATGAAACAGAACGATATCTTGTAGAAGTTTCACAAGGTATTT
CCACTACAATTAATGTGAAATGTAAAAGTATATTTAGGACACTATATTCTATGGGAGATACTTATTTTGAGATTAATGAT
AGTGAAAAAGAAGTCAATAGATACTTATCAAAAAAATTAAAATTATTTGAATTTGATTGGTTAGGTATTATAGATTCTAA
TGGAAATTTTGTAAGTGCCCTTAAAGATACAGGTAATGTTAAAGGACAAGACTTTTATAGAAAAGCCCTTCAAGGCAAAG
AAACAATTACTCCTGTTAAATCACAATCTGGTACATATGGAATTTTATATTCTGTACCACTATACAATGGCGATAAAATT
GTTGGAGCTGTTGCTGCTTGGAATACTATTGATACTATGAGAAATTTATTAAGTGTAGAAAGCTTTCATGGTGAAGGATT
TTCCCAAATTATCGACCAAGATGGAAATTTTATTGTAAGTTCAGCAAACAAAAATGCTCCAAAAAATGTGGTAAATTTTT
TTGACATGATTAAACACCAAGGAAAACAGGTTGATAAAAATAAACTTGAAGAAATGAAAATAAACTTAAAAAAGAACAAA
ACTGGTTCTATGTATTATACATTAAATGATGGTATTTCTAAGGCAATGCATTATCTTCCATTACAAGAAGAAAACTTATA
CCTCCTTTCAATTGTTCCAACAAAAACAGCAAGTGCACAGTTTGATTTACTTCTAAAAAAAGCAATCTTCATCAATATTT
TAATTGTTATACTATTTTTATTGCTTATTATATTGATTATGTTTATAAATCAAAAGAACAGGGCACAACTTATAAAAATC
GCCTATGTAGACTCTGTAACTAAAGGTTACAGTAAAGCACGTTTTGATATTGAAGCTAAAAAAATTATACAGTCATCTTC
ATCAGAAAGCTATTCATTGGTATCTATAAATATTCAGAAATTCAAACTTATTAATGATTCTTTTGGTAGTGAAGCAGGAG
ATAAAACATTAAAGTACATACATGATGTCATTAGTAATTATCTAGAACCAGGAGAATTGCTTTGTCGAGTTTCTAATGAC
CAGTTTAATGTACTTATTAAAACTATTCCTCAAAAAGAAATTCTTAAGTACATAGAAAATATCACCAATGATATTAATAG
TTTCAATAAAAATGAAGAATGTAAATATTTTATAGCTCTATCTATAGGTGTATATAAAATTGATGACCCAAATCTACCTT
TAGTTTCAATTCAAGACCGTGCAAATGTTGCACGAAAAAATAATAAAGGAAACATTGGAAATCATCCACTTTATACATGT
GTTTTTTATAGTGATTTAGAGCGTTTAAAAATGATTAAAGAAAAAGAAATGGAAAATAGAATGGAGGAAGCATTAAATAA
TAACGAATTTATAGTATATCTTCAGCCTAAAATAAGCCTCAAAGATAATACTATTGTAGGTGCAGAAGCATTAGTAAGAT
GGCAAGACCCAAATAAAGGTCTTATACCACCAGACGAGTTTATTCCTTTCTTTGAAAAAAATGGTTTTATTACAAAACTC
GACCACTATGTTTTTGAAAAAGTATGCAGTATGATAAGAAAATGGATAGATAATGGAGAAACTCCAATACCTGTTTCAGT
TAATTTTTCACGTGCTAATTTAAATAATATAGATTTTTTAGAAAAATACAGAATGCTTCGTAATAAATACAACATTCCTG
CTAAGCTCTTAGAAATTGAATTAACTGAAACACTTGTATTTGAAAATCTCCAAAAATTAATTAATATAATAGACCAAATC
CATGAAGAAGGTTTTCAATGTTCACTAGATGACTTTGGAAGTGGATACTCTTCACTCAATATGTTAAAAGAAATAAAAGT
TGACACATTAAAACTTGACCGTGCTTTTTTTAGCTCACCTAATGCAGATAATATTGCTGAAAATCATGTAATAGAATCTA
TAGTTAATTTGGCAAAAAAATTAAATATGAATAGTATATCAGAAGGTGTTGAAACAATCTTGCAAATGGATTATCTTAAA
AAAATTAATTGTGATATGATACAAGGATATGTTTTTTCAAAACCTCTGCCTCAAGAAATATTTGAGAAAATGACTTTTGG
AAAAAAACTAGAAGAAACCAGTATGGATAGTTCCGTTTAA

Upstream 100 bases:

>100_bases
AATAAAATTTAATATCTTTGTATGAAAAGATATTTGGTATAATATGTCTGAGAGAATTCTTATTTGTAAACAAATAAAGG
ATGGAGGATGAAACAAAAGA

Downstream 100 bases:

>100_bases
ATAAAATAAAAAACTTGTCTCTATAAAATAATTTTAATCATTTTATAAAGACAAGTTTTTTTATTTTCCAATTTAATTTT
ATTTTCTAAATTTCTTATAC

Product: signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 759; Mature: 759

Protein sequence:

>759_residues
MNFENTKNKKIIATLLLTLLLIVSLTCVTFIMNLNKVTHNETERYLVEVSQGISTTINVKCKSIFRTLYSMGDTYFEIND
SEKEVNRYLSKKLKLFEFDWLGIIDSNGNFVSALKDTGNVKGQDFYRKALQGKETITPVKSQSGTYGILYSVPLYNGDKI
VGAVAAWNTIDTMRNLLSVESFHGEGFSQIIDQDGNFIVSSANKNAPKNVVNFFDMIKHQGKQVDKNKLEEMKINLKKNK
TGSMYYTLNDGISKAMHYLPLQEENLYLLSIVPTKTASAQFDLLLKKAIFINILIVILFLLLIILIMFINQKNRAQLIKI
AYVDSVTKGYSKARFDIEAKKIIQSSSSESYSLVSINIQKFKLINDSFGSEAGDKTLKYIHDVISNYLEPGELLCRVSND
QFNVLIKTIPQKEILKYIENITNDINSFNKNEECKYFIALSIGVYKIDDPNLPLVSIQDRANVARKNNKGNIGNHPLYTC
VFYSDLERLKMIKEKEMENRMEEALNNNEFIVYLQPKISLKDNTIVGAEALVRWQDPNKGLIPPDEFIPFFEKNGFITKL
DHYVFEKVCSMIRKWIDNGETPIPVSVNFSRANLNNIDFLEKYRMLRNKYNIPAKLLEIELTETLVFENLQKLINIIDQI
HEEGFQCSLDDFGSGYSSLNMLKEIKVDTLKLDRAFFSSPNADNIAENHVIESIVNLAKKLNMNSISEGVETILQMDYLK
KINCDMIQGYVFSKPLPQEIFEKMTFGKKLEETSMDSSV

Sequences:

>Translated_759_residues
MNFENTKNKKIIATLLLTLLLIVSLTCVTFIMNLNKVTHNETERYLVEVSQGISTTINVKCKSIFRTLYSMGDTYFEIND
SEKEVNRYLSKKLKLFEFDWLGIIDSNGNFVSALKDTGNVKGQDFYRKALQGKETITPVKSQSGTYGILYSVPLYNGDKI
VGAVAAWNTIDTMRNLLSVESFHGEGFSQIIDQDGNFIVSSANKNAPKNVVNFFDMIKHQGKQVDKNKLEEMKINLKKNK
TGSMYYTLNDGISKAMHYLPLQEENLYLLSIVPTKTASAQFDLLLKKAIFINILIVILFLLLIILIMFINQKNRAQLIKI
AYVDSVTKGYSKARFDIEAKKIIQSSSSESYSLVSINIQKFKLINDSFGSEAGDKTLKYIHDVISNYLEPGELLCRVSND
QFNVLIKTIPQKEILKYIENITNDINSFNKNEECKYFIALSIGVYKIDDPNLPLVSIQDRANVARKNNKGNIGNHPLYTC
VFYSDLERLKMIKEKEMENRMEEALNNNEFIVYLQPKISLKDNTIVGAEALVRWQDPNKGLIPPDEFIPFFEKNGFITKL
DHYVFEKVCSMIRKWIDNGETPIPVSVNFSRANLNNIDFLEKYRMLRNKYNIPAKLLEIELTETLVFENLQKLINIIDQI
HEEGFQCSLDDFGSGYSSLNMLKEIKVDTLKLDRAFFSSPNADNIAENHVIESIVNLAKKLNMNSISEGVETILQMDYLK
KINCDMIQGYVFSKPLPQEIFEKMTFGKKLEETSMDSSV
>Mature_759_residues
MNFENTKNKKIIATLLLTLLLIVSLTCVTFIMNLNKVTHNETERYLVEVSQGISTTINVKCKSIFRTLYSMGDTYFEIND
SEKEVNRYLSKKLKLFEFDWLGIIDSNGNFVSALKDTGNVKGQDFYRKALQGKETITPVKSQSGTYGILYSVPLYNGDKI
VGAVAAWNTIDTMRNLLSVESFHGEGFSQIIDQDGNFIVSSANKNAPKNVVNFFDMIKHQGKQVDKNKLEEMKINLKKNK
TGSMYYTLNDGISKAMHYLPLQEENLYLLSIVPTKTASAQFDLLLKKAIFINILIVILFLLLIILIMFINQKNRAQLIKI
AYVDSVTKGYSKARFDIEAKKIIQSSSSESYSLVSINIQKFKLINDSFGSEAGDKTLKYIHDVISNYLEPGELLCRVSND
QFNVLIKTIPQKEILKYIENITNDINSFNKNEECKYFIALSIGVYKIDDPNLPLVSIQDRANVARKNNKGNIGNHPLYTC
VFYSDLERLKMIKEKEMENRMEEALNNNEFIVYLQPKISLKDNTIVGAEALVRWQDPNKGLIPPDEFIPFFEKNGFITKL
DHYVFEKVCSMIRKWIDNGETPIPVSVNFSRANLNNIDFLEKYRMLRNKYNIPAKLLEIELTETLVFENLQKLINIIDQI
HEEGFQCSLDDFGSGYSSLNMLKEIKVDTLKLDRAFFSSPNADNIAENHVIESIVNLAKKLNMNSISEGVETILQMDYLK
KINCDMIQGYVFSKPLPQEIFEKMTFGKKLEETSMDSSV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=438, Percent_Identity=28.5388127853881, Blast_Score=193, Evalue=4e-50,
Organism=Escherichia coli, GI87081921, Length=389, Percent_Identity=27.7634961439589, Blast_Score=163, Evalue=3e-41,
Organism=Escherichia coli, GI226510982, Length=336, Percent_Identity=29.7619047619048, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI87081845, Length=244, Percent_Identity=31.5573770491803, Blast_Score=146, Evalue=5e-36,
Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=31.4285714285714, Blast_Score=141, Evalue=2e-34,
Organism=Escherichia coli, GI87081743, Length=244, Percent_Identity=31.9672131147541, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=31.0924369747899, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI1788502, Length=246, Percent_Identity=32.1138211382114, Blast_Score=128, Evalue=2e-30,
Organism=Escherichia coli, GI87081980, Length=249, Percent_Identity=28.9156626506024, Blast_Score=122, Evalue=1e-28,
Organism=Escherichia coli, GI1787055, Length=286, Percent_Identity=27.972027972028, Blast_Score=113, Evalue=6e-26,
Organism=Escherichia coli, GI1788849, Length=248, Percent_Identity=29.0322580645161, Blast_Score=108, Evalue=2e-24,
Organism=Escherichia coli, GI87082096, Length=245, Percent_Identity=26.1224489795918, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1788381, Length=456, Percent_Identity=23.9035087719298, Blast_Score=90, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 86784; Mature: 86784

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFENTKNKKIIATLLLTLLLIVSLTCVTFIMNLNKVTHNETERYLVEVSQGISTTINVK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEHH
CKSIFRTLYSMGDTYFEINDSEKEVNRYLSKKLKLFEFDWLGIIDSNGNFVSALKDTGNV
HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHEEEEEEEEEEECCCCEEEEECCCCCC
KGQDFYRKALQGKETITPVKSQSGTYGILYSVPLYNGDKIVGAVAAWNTIDTMRNLLSVE
CCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHH
SFHGEGFSQIIDQDGNFIVSSANKNAPKNVVNFFDMIKHQGKQVDKNKLEEMKINLKKNK
HHCCCCHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHEEEEECC
TGSMYYTLNDGISKAMHYLPLQEENLYLLSIVPTKTASAQFDLLLKKAIFINILIVILFL
CCCEEEEECHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
LLIILIMFINQKNRAQLIKIAYVDSVTKGYSKARFDIEAKKIIQSSSSESYSLVSINIQK
HHHHHHHHHCCCCCHHEEEEEEHHHHHHCCHHHEECHHHHHHHHCCCCCCEEEEEEEEEE
FKLINDSFGSEAGDKTLKYIHDVISNYLEPGELLCRVSNDQFNVLIKTIPQKEILKYIEN
EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEECCHHHHHHHHHH
ITNDINSFNKNEECKYFIALSIGVYKIDDPNLPLVSIQDRANVARKNNKGNIGNHPLYTC
HHHHHHHCCCCCCCEEEEEEEEEEEEECCCCCCEEEECCHHHHHHCCCCCCCCCCCCEEE
VFYSDLERLKMIKEKEMENRMEEALNNNEFIVYLQPKISLKDNTIVGAEALVRWQDPNKG
EEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECCCEEECHHHEEEEECCCCC
LIPPDEFIPFFEKNGFITKLDHYVFEKVCSMIRKWIDNGETPIPVSVNFSRANLNNIDFL
CCCCHHHCCHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHH
EKYRMLRNKYNIPAKLLEIELTETLVFENLQKLINIIDQIHEEGFQCSLDDFGSGYSSLN
HHHHHHHHCCCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHCCCHHHHH
MLKEIKVDTLKLDRAFFSSPNADNIAENHVIESIVNLAKKLNMNSISEGVETILQMDYLK
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
KINCDMIQGYVFSKPLPQEIFEKMTFGKKLEETSMDSSV
HCCHHHHCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCC
>Mature Secondary Structure
MNFENTKNKKIIATLLLTLLLIVSLTCVTFIMNLNKVTHNETERYLVEVSQGISTTINVK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEHH
CKSIFRTLYSMGDTYFEINDSEKEVNRYLSKKLKLFEFDWLGIIDSNGNFVSALKDTGNV
HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHEEEEEEEEEEECCCCEEEEECCCCCC
KGQDFYRKALQGKETITPVKSQSGTYGILYSVPLYNGDKIVGAVAAWNTIDTMRNLLSVE
CCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHH
SFHGEGFSQIIDQDGNFIVSSANKNAPKNVVNFFDMIKHQGKQVDKNKLEEMKINLKKNK
HHCCCCHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHEEEEECC
TGSMYYTLNDGISKAMHYLPLQEENLYLLSIVPTKTASAQFDLLLKKAIFINILIVILFL
CCCEEEEECHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
LLIILIMFINQKNRAQLIKIAYVDSVTKGYSKARFDIEAKKIIQSSSSESYSLVSINIQK
HHHHHHHHHCCCCCHHEEEEEEHHHHHHCCHHHEECHHHHHHHHCCCCCCEEEEEEEEEE
FKLINDSFGSEAGDKTLKYIHDVISNYLEPGELLCRVSNDQFNVLIKTIPQKEILKYIEN
EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEECCHHHHHHHHHH
ITNDINSFNKNEECKYFIALSIGVYKIDDPNLPLVSIQDRANVARKNNKGNIGNHPLYTC
HHHHHHHCCCCCCCEEEEEEEEEEEEECCCCCCEEEECCHHHHHHCCCCCCCCCCCCEEE
VFYSDLERLKMIKEKEMENRMEEALNNNEFIVYLQPKISLKDNTIVGAEALVRWQDPNKG
EEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECCCEEECHHHEEEEECCCCC
LIPPDEFIPFFEKNGFITKLDHYVFEKVCSMIRKWIDNGETPIPVSVNFSRANLNNIDFL
CCCCHHHCCHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHH
EKYRMLRNKYNIPAKLLEIELTETLVFENLQKLINIIDQIHEEGFQCSLDDFGSGYSSLN
HHHHHHHHCCCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHCCCHHHHH
MLKEIKVDTLKLDRAFFSSPNADNIAENHVIESIVNLAKKLNMNSISEGVETILQMDYLK
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
KINCDMIQGYVFSKPLPQEIFEKMTFGKKLEETSMDSSV
HCCHHHHCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]