| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126700445
Identifier: 126700445
GI number: 126700445
Start: 3301529
End: 3302491
Strand: Direct
Name: 126700445
Synonym: CD2829
Alternate gene names: NA
Gene position: 3301529-3302491 (Clockwise)
Preceding gene: 126700444
Following gene: 126700458
Centisome position: 76.95
GC content: 27.93
Gene sequence:
>963_bases TTGAAAAAAGGTTATGTTTATATAATACTGACTACCTTATTTTTTAGTTCAATGGAAATTAGTCTAAAAACTGTCACTAA TGACTTTAATCCCTTACAAATAACTTTATCAAGATTTTTTGTTGGCGGTTTAGTCTTACTACCTTTTGCTGTAAAAAGAT TAAGAGCCCTTAGTCTTTCTATTACAAAATCAGACTTAAAATACTTTGCATTTTTAGGTTTTATGTGTGTAGTAGTAAGT ATGTCATTGTATCAACTTGCTGTTCTAAACACAAAGGCATCTGTAGTTGCTGTTTTGTTCAGTTGTAATCCAGTCTTTGT AATGCTTTTAGCTTACTTAATTTTGAAGGAAAAAATATATAGGCACAATGTAATTTCACTTATATTAGAAGTTCTTGGAA TTATAGTTATAATAAATCCATTGCATACAAAACTAACTCTTAGTGGAATATTCTTAACATTATCTTCTGCTATTATTTTT TCAATGTATACTGTATTTGGTAAAAGAAAAACCTTAAAATTTGGTGGAATAGTTGTAACCTGCTTTAGCTTTATATTTGG TAGTTTGGAAATGTTGATATTGGTTTTACTCACTAAAATTAATTTTATCGCAGATATATTAAATAAAAATAAGCTTCATG TATTTGCAAATATCCCTATTTTTAGTGGATATACCTTACACAATATGCCCATTATGATTTATGTATTCGTATTTGTTACA GGTGTTGGTTATGCGCTTTACTTTATGGCAATGGAAGCTACATCTACTAGTCTTACATCTTTAGTATTCTTCTTTAAACC AGTAATATCTCCAATACTAGCATTATTAATACTTAAAGAAATTATCCCTATAAACATGGTTGTAGGAATTTTATTGATAG TAATTGGTTCAATAATTTCTATTATACCTACGATAATTACTCAAATGCATAATAAACACGTTGAAGCCTTGTATAAGGAG TAG
Upstream 100 bases:
>100_bases TATAATTTTATGTACTATATTTTATACATACCATATTATTCCAATATGCTTGAATATTCTTATCTATAGTACTAATATAA ATTACAAGGAGGTGTTTGAC
Downstream 100 bases:
>100_bases TAATTGATAATCTATCATAGTTATACATAAGACAAAATTTATTAGATTTAAACGCAATATAAAAGAGATGCCATTATAAT AGCATCTCTTTATTTATATT
Product: hypothetical protein
Products: NA
Alternate protein names: ORFY [H]
Number of amino acids: Translated: 320; Mature: 320
Protein sequence:
>320_residues MKKGYVYIILTTLFFSSMEISLKTVTNDFNPLQITLSRFFVGGLVLLPFAVKRLRALSLSITKSDLKYFAFLGFMCVVVS MSLYQLAVLNTKASVVAVLFSCNPVFVMLLAYLILKEKIYRHNVISLILEVLGIIVIINPLHTKLTLSGIFLTLSSAIIF SMYTVFGKRKTLKFGGIVVTCFSFIFGSLEMLILVLLTKINFIADILNKNKLHVFANIPIFSGYTLHNMPIMIYVFVFVT GVGYALYFMAMEATSTSLTSLVFFFKPVISPILALLILKEIIPINMVVGILLIVIGSIISIIPTIITQMHNKHVEALYKE
Sequences:
>Translated_320_residues MKKGYVYIILTTLFFSSMEISLKTVTNDFNPLQITLSRFFVGGLVLLPFAVKRLRALSLSITKSDLKYFAFLGFMCVVVS MSLYQLAVLNTKASVVAVLFSCNPVFVMLLAYLILKEKIYRHNVISLILEVLGIIVIINPLHTKLTLSGIFLTLSSAIIF SMYTVFGKRKTLKFGGIVVTCFSFIFGSLEMLILVLLTKINFIADILNKNKLHVFANIPIFSGYTLHNMPIMIYVFVFVT GVGYALYFMAMEATSTSLTSLVFFFKPVISPILALLILKEIIPINMVVGILLIVIGSIISIIPTIITQMHNKHVEALYKE >Mature_320_residues MKKGYVYIILTTLFFSSMEISLKTVTNDFNPLQITLSRFFVGGLVLLPFAVKRLRALSLSITKSDLKYFAFLGFMCVVVS MSLYQLAVLNTKASVVAVLFSCNPVFVMLLAYLILKEKIYRHNVISLILEVLGIIVIINPLHTKLTLSGIFLTLSSAIIF SMYTVFGKRKTLKFGGIVVTCFSFIFGSLEMLILVLLTKINFIADILNKNKLHVFANIPIFSGYTLHNMPIMIYVFVFVT GVGYALYFMAMEATSTSLTSLVFFFKPVISPILALLILKEIIPINMVVGILLIVIGSIISIIPTIITQMHNKHVEALYKE
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 35815; Mature: 35815
Theoretical pI: Translated: 10.15; Mature: 10.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKGYVYIILTTLFFSSMEISLKTVTNDFNPLQITLSRFFVGGLVLLPFAVKRLRALSLS CCCCEEEEEHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ITKSDLKYFAFLGFMCVVVSMSLYQLAVLNTKASVVAVLFSCNPVFVMLLAYLILKEKIY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH RHNVISLILEVLGIIVIINPLHTKLTLSGIFLTLSSAIIFSMYTVFGKRKTLKFGGIVVT HHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHH CFSFIFGSLEMLILVLLTKINFIADILNKNKLHVFANIPIFSGYTLHNMPIMIYVFVFVT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEECCCCHHCCHHHHHHHHHHH GVGYALYFMAMEATSTSLTSLVFFFKPVISPILALLILKEIIPINMVVGILLIVIGSIIS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IIPTIITQMHNKHVEALYKE HHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKKGYVYIILTTLFFSSMEISLKTVTNDFNPLQITLSRFFVGGLVLLPFAVKRLRALSLS CCCCEEEEEHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ITKSDLKYFAFLGFMCVVVSMSLYQLAVLNTKASVVAVLFSCNPVFVMLLAYLILKEKIY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH RHNVISLILEVLGIIVIINPLHTKLTLSGIFLTLSSAIIFSMYTVFGKRKTLKFGGIVVT HHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHH CFSFIFGSLEMLILVLLTKINFIADILNKNKLHVFANIPIFSGYTLHNMPIMIYVFVFVT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEECCCCHHCCHHHHHHHHHHH GVGYALYFMAMEATSTSLTSLVFFFKPVISPILALLILKEIIPINMVVGILLIVIGSIIS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IIPTIITQMHNKHVEALYKE HHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8550525 [H]