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The map label for this gene is ydhC [H]

Identifier: 126700430

GI number: 126700430

Start: 3284923

End: 3285618

Strand: Direct

Name: ydhC [H]

Synonym: CD2814

Alternate gene names: 126700430

Gene position: 3284923-3285618 (Clockwise)

Preceding gene: 126700426

Following gene: 126700431

Centisome position: 76.57

GC content: 27.44

Gene sequence:

>696_bases
TTGTTTAGGGGGGTATTATTAAGTATGGCTACATTTAAAAGATTACAAGAACAAGCATATGACTACTTAAAAGAATTGAT
ACTATCTGGAGAAATGATAGAAAATGAAATATATTCTGAAACAAAACTTGCTAGTGAAATAGGTATCTCTAGAACACCTA
TAAGAGATGCTCTTCAAAGACTTAGTCAAGATGGATTTATAGATATAATCCCAAGCAAAGGATTTAGAATCCATCAAATT
ACAGCAAATGAAATTGTAGAGATATTCCAAATACGCTCTGCAATAGAAGGGTTTTGTACTTTTTTAATTACAAGTCAATA
CAAAGAAGCTAGAGCAGTAGAAACTATAAGTAAATTAAAACATCTTTTAGATAAACAAAAAGATATTTTATTAGGTGATA
AAAATTTAAACTCATTTGCAGAATACGATACATTATTTCACACAACTATAGTTTCATATGCTCAAAATACTGAATTTGAC
AAAATGTTTAACAATTATATGTACAGAATAAAAAAATTAGCTCTCGATTCATTGTCACATGAAGGAAGGCTTGAAACAAC
ATTAAAAGAGCACACAGATATTTTTAATAATATTGCAAATGGATGTATTGAAGATATTTACAGAACTACTCTCATTCATA
TGGAAACTCCTAAATACATTAATTTAGAAGATTTTTGTAACAATAAGTTATTTTAG

Upstream 100 bases:

>100_bases
TTATATTTTTTAATCTTATCTGCAATTTAAATTGCAAAAGATTGACCTTATTTTCACTATGTTGTATGCTTAAAATTATA
TAAGTTTTTGTATTTTTATA

Downstream 100 bases:

>100_bases
TATTATACTTTCATTTATTAAAAATATATCTATCTCAAATTAATTTCCTAATTTATAAAAAATATTCTATAATTATATTG
TAACTAATACTTATTCTAAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MFRGVLLSMATFKRLQEQAYDYLKELILSGEMIENEIYSETKLASEIGISRTPIRDALQRLSQDGFIDIIPSKGFRIHQI
TANEIVEIFQIRSAIEGFCTFLITSQYKEARAVETISKLKHLLDKQKDILLGDKNLNSFAEYDTLFHTTIVSYAQNTEFD
KMFNNYMYRIKKLALDSLSHEGRLETTLKEHTDIFNNIANGCIEDIYRTTLIHMETPKYINLEDFCNNKLF

Sequences:

>Translated_231_residues
MFRGVLLSMATFKRLQEQAYDYLKELILSGEMIENEIYSETKLASEIGISRTPIRDALQRLSQDGFIDIIPSKGFRIHQI
TANEIVEIFQIRSAIEGFCTFLITSQYKEARAVETISKLKHLLDKQKDILLGDKNLNSFAEYDTLFHTTIVSYAQNTEFD
KMFNNYMYRIKKLALDSLSHEGRLETTLKEHTDIFNNIANGCIEDIYRTTLIHMETPKYINLEDFCNNKLF
>Mature_231_residues
MFRGVLLSMATFKRLQEQAYDYLKELILSGEMIENEIYSETKLASEIGISRTPIRDALQRLSQDGFIDIIPSKGFRIHQI
TANEIVEIFQIRSAIEGFCTFLITSQYKEARAVETISKLKHLLDKQKDILLGDKNLNSFAEYDTLFHTTIVSYAQNTEFD
KMFNNYMYRIKKLALDSLSHEGRLETTLKEHTDIFNNIANGCIEDIYRTTLIHMETPKYINLEDFCNNKLF

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26877; Mature: 26877

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRGVLLSMATFKRLQEQAYDYLKELILSGEMIENEIYSETKLASEIGISRTPIRDALQR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LSQDGFIDIIPSKGFRIHQITANEIVEIFQIRSAIEGFCTFLITSQYKEARAVETISKLK
HCCCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLLDKQKDILLGDKNLNSFAEYDTLFHTTIVSYAQNTEFDKMFNNYMYRIKKLALDSLSH
HHHHHHHCEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
EGRLETTLKEHTDIFNNIANGCIEDIYRTTLIHMETPKYINLEDFCNNKLF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEECHHHHHCCCCC
>Mature Secondary Structure
MFRGVLLSMATFKRLQEQAYDYLKELILSGEMIENEIYSETKLASEIGISRTPIRDALQR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LSQDGFIDIIPSKGFRIHQITANEIVEIFQIRSAIEGFCTFLITSQYKEARAVETISKLK
HCCCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLLDKQKDILLGDKNLNSFAEYDTLFHTTIVSYAQNTEFDKMFNNYMYRIKKLALDSLSH
HHHHHHHCEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
EGRLETTLKEHTDIFNNIANGCIEDIYRTTLIHMETPKYINLEDFCNNKLF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEECHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]