Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

Click here to switch to the map view.

The map label for this gene is gtcA [H]

Identifier: 126700404

GI number: 126700404

Start: 3244556

End: 3244957

Strand: Direct

Name: gtcA [H]

Synonym: CD2788

Alternate gene names: 126700404

Gene position: 3244556-3244957 (Clockwise)

Preceding gene: 126700382

Following gene: 126700425

Centisome position: 75.63

GC content: 21.14

Gene sequence:

>402_bases
TTGATTTTAAAAAAACATAAAGAGACAATATTATATTTATTCTTTGGAGCATTTACTACTCTTGTAAATATAGTTTCGTA
TTTATTTTTTACTAGAGTTATTTTATTTAATTTTATGGTTGCAAATGCTTTGGCATGGATACTTGCTGTTTTATTTGCTT
ATGTTACTAATAAGTTTTTTGTGTTTGAAAGTAAAAGAATTGAAATAAAGTTCTTATTTAAGGAATTTTTGTCTTTTGTT
AGTTTTAGGCTACTTTCTGGTGTCGTTGAAATGTTAATTATGTATGTAATGATTGATTTGCTTTTTGTAAATGATGTTAT
TGTAAAAGTATTTACTAATATAATTGTTATAGTTTTAAATTATTTGTTTAGTAAAATGATAATTTTTAAAAATAAAAAGT
AG

Upstream 100 bases:

>100_bases
AATATTTTAAGATATATTGATTTATTAATAGATGTGCTATACTAATGTTTGTTAGTATCTTTAAGTATATTTATATTAAA
TTAGCTTAGGAGGATTATAT

Downstream 100 bases:

>100_bases
ACAATCAAAAAATTGTCTACCTTTTGTTTTTAAAAGATTTTAATATTTAAAATCCATCATCTGTAGCGTTAGTTCTTCCC
CATCTAGAAACCTCTTTCGT

Product: cell wall teichoic acid glycosylation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MILKKHKETILYLFFGAFTTLVNIVSYLFFTRVILFNFMVANALAWILAVLFAYVTNKFFVFESKRIEIKFLFKEFLSFV
SFRLLSGVVEMLIMYVMIDLLFVNDVIVKVFTNIIVIVLNYLFSKMIIFKNKK

Sequences:

>Translated_133_residues
MILKKHKETILYLFFGAFTTLVNIVSYLFFTRVILFNFMVANALAWILAVLFAYVTNKFFVFESKRIEIKFLFKEFLSFV
SFRLLSGVVEMLIMYVMIDLLFVNDVIVKVFTNIIVIVLNYLFSKMIIFKNKK
>Mature_133_residues
MILKKHKETILYLFFGAFTTLVNIVSYLFFTRVILFNFMVANALAWILAVLFAYVTNKFFVFESKRIEIKFLFKEFLSFV
SFRLLSGVVEMLIMYVMIDLLFVNDVIVKVFTNIIVIVLNYLFSKMIIFKNKK

Specific function: Involved in the decoration of cell wall teichoic acid with galactose and glucose [H]

COG id: COG2246

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gtrA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007267 [H]

Pfam domain/function: PF04138 GtrA [H]

EC number: NA

Molecular weight: Translated: 15773; Mature: 15773

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILKKHKETILYLFFGAFTTLVNIVSYLFFTRVILFNFMVANALAWILAVLFAYVTNKFF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFESKRIEIKFLFKEFLSFVSFRLLSGVVEMLIMYVMIDLLFVNDVIVKVFTNIIVIVLN
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLFSKMIIFKNKK
HHHHHHHHHCCCC
>Mature Secondary Structure
MILKKHKETILYLFFGAFTTLVNIVSYLFFTRVILFNFMVANALAWILAVLFAYVTNKFF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFESKRIEIKFLFKEFLSFVSFRLLSGVVEMLIMYVMIDLLFVNDVIVKVFTNIIVIVLN
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLFSKMIIFKNKK
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]