| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is gtcA [H]
Identifier: 126700404
GI number: 126700404
Start: 3244556
End: 3244957
Strand: Direct
Name: gtcA [H]
Synonym: CD2788
Alternate gene names: 126700404
Gene position: 3244556-3244957 (Clockwise)
Preceding gene: 126700382
Following gene: 126700425
Centisome position: 75.63
GC content: 21.14
Gene sequence:
>402_bases TTGATTTTAAAAAAACATAAAGAGACAATATTATATTTATTCTTTGGAGCATTTACTACTCTTGTAAATATAGTTTCGTA TTTATTTTTTACTAGAGTTATTTTATTTAATTTTATGGTTGCAAATGCTTTGGCATGGATACTTGCTGTTTTATTTGCTT ATGTTACTAATAAGTTTTTTGTGTTTGAAAGTAAAAGAATTGAAATAAAGTTCTTATTTAAGGAATTTTTGTCTTTTGTT AGTTTTAGGCTACTTTCTGGTGTCGTTGAAATGTTAATTATGTATGTAATGATTGATTTGCTTTTTGTAAATGATGTTAT TGTAAAAGTATTTACTAATATAATTGTTATAGTTTTAAATTATTTGTTTAGTAAAATGATAATTTTTAAAAATAAAAAGT AG
Upstream 100 bases:
>100_bases AATATTTTAAGATATATTGATTTATTAATAGATGTGCTATACTAATGTTTGTTAGTATCTTTAAGTATATTTATATTAAA TTAGCTTAGGAGGATTATAT
Downstream 100 bases:
>100_bases ACAATCAAAAAATTGTCTACCTTTTGTTTTTAAAAGATTTTAATATTTAAAATCCATCATCTGTAGCGTTAGTTCTTCCC CATCTAGAAACCTCTTTCGT
Product: cell wall teichoic acid glycosylation protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 133; Mature: 133
Protein sequence:
>133_residues MILKKHKETILYLFFGAFTTLVNIVSYLFFTRVILFNFMVANALAWILAVLFAYVTNKFFVFESKRIEIKFLFKEFLSFV SFRLLSGVVEMLIMYVMIDLLFVNDVIVKVFTNIIVIVLNYLFSKMIIFKNKK
Sequences:
>Translated_133_residues MILKKHKETILYLFFGAFTTLVNIVSYLFFTRVILFNFMVANALAWILAVLFAYVTNKFFVFESKRIEIKFLFKEFLSFV SFRLLSGVVEMLIMYVMIDLLFVNDVIVKVFTNIIVIVLNYLFSKMIIFKNKK >Mature_133_residues MILKKHKETILYLFFGAFTTLVNIVSYLFFTRVILFNFMVANALAWILAVLFAYVTNKFFVFESKRIEIKFLFKEFLSFV SFRLLSGVVEMLIMYVMIDLLFVNDVIVKVFTNIIVIVLNYLFSKMIIFKNKK
Specific function: Involved in the decoration of cell wall teichoic acid with galactose and glucose [H]
COG id: COG2246
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gtrA family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007267 [H]
Pfam domain/function: PF04138 GtrA [H]
EC number: NA
Molecular weight: Translated: 15773; Mature: 15773
Theoretical pI: Translated: 10.43; Mature: 10.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILKKHKETILYLFFGAFTTLVNIVSYLFFTRVILFNFMVANALAWILAVLFAYVTNKFF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VFESKRIEIKFLFKEFLSFVSFRLLSGVVEMLIMYVMIDLLFVNDVIVKVFTNIIVIVLN EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLFSKMIIFKNKK HHHHHHHHHCCCC >Mature Secondary Structure MILKKHKETILYLFFGAFTTLVNIVSYLFFTRVILFNFMVANALAWILAVLFAYVTNKFF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VFESKRIEIKFLFKEFLSFVSFRLLSGVVEMLIMYVMIDLLFVNDVIVKVFTNIIVIVLN EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLFSKMIIFKNKK HHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11679669 [H]