| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is fbpA [H]
Identifier: 126700212
GI number: 126700212
Start: 2998152
End: 2999927
Strand: Direct
Name: fbpA [H]
Synonym: CD2592
Alternate gene names: 126700212
Gene position: 2998152-2999927 (Clockwise)
Preceding gene: 126700188
Following gene: 126700223
Centisome position: 69.88
GC content: 28.1
Gene sequence:
>1776_bases ATGGCATTAGATGGATTAGTTATACATTCAATAGTCGATGAATTATCATCAAAACTTACAGGTGGAAAAATAGATAAGAT ACATCAACCTGAAGATGATGAGGTAATTTTTAATATAAGAAATAATAAAGAAAATTTTAGATTGGTTTTAAGTGCAAGTG CCTCAAATCCTAGAGTTTATCTTACAAGTAATTATCAAAAAGAAAACCCTCTAAAAGCGCCTATGTTTTGTATGTTACTT AGAAAATACATACAAGGTGGAAATATAGTAGAAATTTCTCAAATAGGTTTTGAAAGAATAATAAAAATAAGTGTTGAATC TTTAGATGAATTAAAAGAAAAGACAGTTAAAAATATTATGATTGAAATTATGGGAAGACATAGCAACATAATAATAACTC ATGGTGAAGAAAATAAAATTATAGATTCTATAAAAAGAGTCCCTTTTAGCATAAGTAGAGTTCGTCAAGTTTTACCTGGT CATGATTATTCATTGCCACCAGAACAAAACAAACTCAACCCTCTTGATGATATATCTAAGGATTTGTTTATTAAAAACCT AGAGGAATTGGAAGGACCTATCTTTAAGTCTATATATTCTAAATTTCTAGGTATAAGCCCTATTATAGCTAAAGAAATTT GCTACAGAGCAGGTGTAAATCAAAATGCTATCATAAAGGATATATCTGATGAACAATTTGATGCTTTACACAAAGTATTT TGTAATTTATTCAATGATATAAATTCTAACAAATACTCTCCTTGCATTATTATAGATAAAAAGGTGGATAGGGTAGTTGA TTTCAGTTGTATAAACCTTACATTATTTAGCGATTTATCATATATAAATAAGGATAGTATGTCTCGTATTCTGGAAGATT TCTATAGAACTAAGGATATTAAAGATAGAATTAATCAACGTTCATCTGATTTAAAGAAGAGTATATCTGTTAAGCTTGAT AGACTTTATAATAAACTTAAAAAACAAGAAGAAGAATTATCAGAATCCGAAAATGCAGATATTTATAAGATAAAAGGAGA ATTGATTACTTCATATATTTATATGGTAGAAAAAGGTATGGAAAGTATTGAAGTTGCTAACTTCTATGATGAAAATTGTA ATGATGTAATAATAGAATTAAATAAAAACTTGACACCATCTGAAAATGCTCAAAAATACTTTAAAAAGTATAACAAAATG AAACATGCTAAAGTCGAGATATCTCATCAAATTTCCTTAAATAAGGAAGAAATAGATTACTTAGAAAACATAATTTTAAG TATTGAAAACTGTGAAAATTTAGCTGAATTACAAGATATAAAAGAAGAACTTGCTAAAGTTGGATACATCAAGACTCAAA AGAAAAACAGTAAAAAGGATACTATCCCATCTACAAAACCTCATGAATTTGTTTCTTCTGATGGATTTAAAATATTGGTT GGTAAAAACAATAAGCAAAATGACTATCTTACACTAAGACTTGCTGATAATGATGACTTATGGATGCATACAAAGAATAT TCCTGGTTCTCATGTAATAATAAAGTGTGCTGGTAAGGAAGTCCCTGATAATACTGTATTTGAAGGAGCTATGCTAGCAG CATTCTTTAGTAAGTCAAAACTTTCTTCTCAGGTGCCTGTAGACTATACTAAGAGAAAAAATGTGAAAAAACCTAGTGGT TCTAAACCAGGTATGGTTATTTATGAAACTAACAGTACTATTTATGTTACTCCTGAAGAAGAAACAGTAGCCAAGCTTAA GGTTAAATCTGAATAA
Upstream 100 bases:
>100_bases TATTAATCTCTATTGTTTAAATTCCCCCTAGTCACAAAGCGTATATTATGTGTATAATTAATTTACTGACTCATTTTGGT CAAAGAAAGGGGTGCTATAA
Downstream 100 bases:
>100_bases ATTCTGCACTAAATACAAAATAAATGTTAGACAACTACACATTATCATTCTAAATAAAAATAGTGGCCTTCTTATAAAGT ACAATAATAAGGCCACTTTC
Product: fibronectin-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 591; Mature: 590
Protein sequence:
>591_residues MALDGLVIHSIVDELSSKLTGGKIDKIHQPEDDEVIFNIRNNKENFRLVLSASASNPRVYLTSNYQKENPLKAPMFCMLL RKYIQGGNIVEISQIGFERIIKISVESLDELKEKTVKNIMIEIMGRHSNIIITHGEENKIIDSIKRVPFSISRVRQVLPG HDYSLPPEQNKLNPLDDISKDLFIKNLEELEGPIFKSIYSKFLGISPIIAKEICYRAGVNQNAIIKDISDEQFDALHKVF CNLFNDINSNKYSPCIIIDKKVDRVVDFSCINLTLFSDLSYINKDSMSRILEDFYRTKDIKDRINQRSSDLKKSISVKLD RLYNKLKKQEEELSESENADIYKIKGELITSYIYMVEKGMESIEVANFYDENCNDVIIELNKNLTPSENAQKYFKKYNKM KHAKVEISHQISLNKEEIDYLENIILSIENCENLAELQDIKEELAKVGYIKTQKKNSKKDTIPSTKPHEFVSSDGFKILV GKNNKQNDYLTLRLADNDDLWMHTKNIPGSHVIIKCAGKEVPDNTVFEGAMLAAFFSKSKLSSQVPVDYTKRKNVKKPSG SKPGMVIYETNSTIYVTPEEETVAKLKVKSE
Sequences:
>Translated_591_residues MALDGLVIHSIVDELSSKLTGGKIDKIHQPEDDEVIFNIRNNKENFRLVLSASASNPRVYLTSNYQKENPLKAPMFCMLL RKYIQGGNIVEISQIGFERIIKISVESLDELKEKTVKNIMIEIMGRHSNIIITHGEENKIIDSIKRVPFSISRVRQVLPG HDYSLPPEQNKLNPLDDISKDLFIKNLEELEGPIFKSIYSKFLGISPIIAKEICYRAGVNQNAIIKDISDEQFDALHKVF CNLFNDINSNKYSPCIIIDKKVDRVVDFSCINLTLFSDLSYINKDSMSRILEDFYRTKDIKDRINQRSSDLKKSISVKLD RLYNKLKKQEEELSESENADIYKIKGELITSYIYMVEKGMESIEVANFYDENCNDVIIELNKNLTPSENAQKYFKKYNKM KHAKVEISHQISLNKEEIDYLENIILSIENCENLAELQDIKEELAKVGYIKTQKKNSKKDTIPSTKPHEFVSSDGFKILV GKNNKQNDYLTLRLADNDDLWMHTKNIPGSHVIIKCAGKEVPDNTVFEGAMLAAFFSKSKLSSQVPVDYTKRKNVKKPSG SKPGMVIYETNSTIYVTPEEETVAKLKVKSE >Mature_590_residues ALDGLVIHSIVDELSSKLTGGKIDKIHQPEDDEVIFNIRNNKENFRLVLSASASNPRVYLTSNYQKENPLKAPMFCMLLR KYIQGGNIVEISQIGFERIIKISVESLDELKEKTVKNIMIEIMGRHSNIIITHGEENKIIDSIKRVPFSISRVRQVLPGH DYSLPPEQNKLNPLDDISKDLFIKNLEELEGPIFKSIYSKFLGISPIIAKEICYRAGVNQNAIIKDISDEQFDALHKVFC NLFNDINSNKYSPCIIIDKKVDRVVDFSCINLTLFSDLSYINKDSMSRILEDFYRTKDIKDRINQRSSDLKKSISVKLDR LYNKLKKQEEELSESENADIYKIKGELITSYIYMVEKGMESIEVANFYDENCNDVIIELNKNLTPSENAQKYFKKYNKMK HAKVEISHQISLNKEEIDYLENIILSIENCENLAELQDIKEELAKVGYIKTQKKNSKKDTIPSTKPHEFVSSDGFKILVG KNNKQNDYLTLRLADNDDLWMHTKNIPGSHVIIKCAGKEVPDNTVFEGAMLAAFFSKSKLSSQVPVDYTKRKNVKKPSGS KPGMVIYETNSTIYVTPEEETVAKLKVKSE
Specific function: Unknown
COG id: COG1293
COG function: function code K; Predicted RNA-binding protein homologous to eukaryotic snRNP
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the SDCCAG1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008532 - InterPro: IPR008616 [H]
Pfam domain/function: PF05670 DUF814; PF05833 FbpA [H]
EC number: NA
Molecular weight: Translated: 67641; Mature: 67510
Theoretical pI: Translated: 7.29; Mature: 7.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALDGLVIHSIVDELSSKLTGGKIDKIHQPEDDEVIFNIRNNKENFRLVLSASASNPRVY CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEE LTSNYQKENPLKAPMFCMLLRKYIQGGNIVEISQIGFERIIKISVESLDELKEKTVKNIM EECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHCHHHHHHHHHHHHHHHHHHHHHHHH IEIMGRHSNIIITHGEENKIIDSIKRVPFSISRVRQVLPGHDYSLPPEQNKLNPLDDISK HHHHCCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH DLFIKNLEELEGPIFKSIYSKFLGISPIIAKEICYRAGVNQNAIIKDISDEQFDALHKVF HHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHH CNLFNDINSNKYSPCIIIDKKVDRVVDFSCINLTLFSDLSYINKDSMSRILEDFYRTKDI HHHHHHCCCCCCCCEEEECCCHHHHHCHHHEEEEHHHHHHHCCHHHHHHHHHHHHHCCHH KDRINQRSSDLKKSISVKLDRLYNKLKKQEEELSESENADIYKIKGELITSYIYMVEKGM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCH ESIEVANFYDENCNDVIIELNKNLTPSENAQKYFKKYNKMKHAKVEISHQISLNKEEIDY HHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEEEEEEECCCHHHHHH LENIILSIENCENLAELQDIKEELAKVGYIKTQKKNSKKDTIPSTKPHEFVSSDGFKILV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHCCCCEEEEE GKNNKQNDYLTLRLADNDDLWMHTKNIPGSHVIIKCAGKEVPDNTVFEGAMLAAFFSKSK ECCCCCCCEEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH LSSQVPVDYTKRKNVKKPSGSKPGMVIYETNSTIYVTPEEETVAKLKVKSE CCCCCCCCHHHCCCCCCCCCCCCCEEEEECCCEEEECCCHHCEEEEEECCC >Mature Secondary Structure ALDGLVIHSIVDELSSKLTGGKIDKIHQPEDDEVIFNIRNNKENFRLVLSASASNPRVY CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEE LTSNYQKENPLKAPMFCMLLRKYIQGGNIVEISQIGFERIIKISVESLDELKEKTVKNIM EECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHCHHHHHHHHHHHHHHHHHHHHHHHH IEIMGRHSNIIITHGEENKIIDSIKRVPFSISRVRQVLPGHDYSLPPEQNKLNPLDDISK HHHHCCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH DLFIKNLEELEGPIFKSIYSKFLGISPIIAKEICYRAGVNQNAIIKDISDEQFDALHKVF HHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHH CNLFNDINSNKYSPCIIIDKKVDRVVDFSCINLTLFSDLSYINKDSMSRILEDFYRTKDI HHHHHHCCCCCCCCEEEECCCHHHHHCHHHEEEEHHHHHHHCCHHHHHHHHHHHHHCCHH KDRINQRSSDLKKSISVKLDRLYNKLKKQEEELSESENADIYKIKGELITSYIYMVEKGM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCH ESIEVANFYDENCNDVIIELNKNLTPSENAQKYFKKYNKMKHAKVEISHQISLNKEEIDY HHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEEEEEEECCCHHHHHH LENIILSIENCENLAELQDIKEELAKVGYIKTQKKNSKKDTIPSTKPHEFVSSDGFKILV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHCCCCEEEEE GKNNKQNDYLTLRLADNDDLWMHTKNIPGSHVIIKCAGKEVPDNTVFEGAMLAAFFSKSK ECCCCCCCEEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH LSSQVPVDYTKRKNVKKPSGSKPGMVIYETNSTIYVTPEEETVAKLKVKSE CCCCCCCCHHHCCCCCCCCCCCCCEEEEECCCEEEECCCHHCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 9534248 [H]