| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is yegM [C]
Identifier: 126700021
GI number: 126700021
Start: 2774898
End: 2776121
Strand: Direct
Name: yegM [C]
Synonym: CD2406
Alternate gene names: 126700021
Gene position: 2774898-2776121 (Clockwise)
Preceding gene: 126700019
Following gene: 126700022
Centisome position: 64.68
GC content: 31.62
Gene sequence:
>1224_bases ATGAAAAGATATTTAATAGTTTTCTTAATGTGTAGTTCACTGTTTTTAGTTGGATGTGGAAAAACAGAAGAATCTGAACC TGAGAAACCAATAGCAGTTTCTGTTCAAAAAGCAATAGGTGGAGAAATTGAAAACACAAATTCTTTCTCAGGAACTACAA AGGTTAAAGATGAAACAGCTGTTACTGCACAGACTGTTGGCACAGTTCAAGAAGTGTATGTAAAACTTGGGCAAAATGTA AGAAAAGGAGATGAATTATTGAGTATAAGCAGTCCAGAGCTAGAAAATAGTGTAAAGCAAAGTAAAGCCTCACTAGATTT AGCAAAAGCAAGTTATTCAAGTGCCACTGGTGGTTCATTAGAGGCACAAGTAAATCAGGCAAAAACAGCTCTTGACAATG CAAAGATTCAATATGAGGAGTCTCAAAGAAATTATGACAATAATAAGATTCTTTATGAACAGGAAGTCATTAGTTTAGAC CAATTTAAAAAAATAGAATTTTCTTTAGAGCAAACAAAACAACAGTTAGATTCTGCTCAAAGAGCATACGATACAGCAAC TTCAAAAAGTATACCTCAAGCTAAAGCACTTGCTAAAAAACAGCTTGACCAAGCTCAAGTATCATATAATTTAGCAATGA GTAATTTAGACAAATTAACATTAACATCTCCAGTAGATGGTACAATAACAGCTAAAAACTTTGATTCAAAGGAAATGATA ACACAATCACAACCAGCTTTTATTATTTCTAATCCTAATATACTAGAAGTTGATTTAAATGTAGCAGAATCAGATATAGG TAAATTTAAGAAAGATGGAAATGTAGATGTTATAATTGAAGACCAAAGGATTTTAGGAAAAATAGATTATGTACCTTCAG TAGTTGACCCTCAGACATCTTTATATCCTGTTAAAGTACTTGTAAATAATACAAACAACAAATTTAAGGCAGGTATGTCT GCTCAAGTAAACTTAAGTGTTGAAAAAGAAAATGGTGCTGTTACAGTACCTAAAAAAGCAATATTTGAAGAAAATGGTAA AAAATATGTATACATAGCAACAAAAGACAATATAGCAAAGAAACACTTGGTTCAAACTGGAATTGTAACAGAGGATAAAA TAGAAATTAAAAGTGGTGTAAGTGATAAAGATACAGTGATTATCGGAGGGATAAGTCTTATTTCTGACGGAACTAAGATA TTTCCTGTAGAAAAGGAGAAGTAG
Upstream 100 bases:
>100_bases AATAAAGGGAAGTTTTTTAATTAGTCTAAAACTAAACTTAAATTATAAGACACTTTAAATTCTACAACAAGCTAGTGTGC AATATATAATAGGAGGAGAT
Downstream 100 bases:
>100_bases ACTATGAATTTAACACAGACTTCCGTTAAACGTCCTCTCACAATCATAATGGTCTTTTTAGTATTAATAGTTTTTGGTGG TATTGGATATAAAAAAATGT
Product: lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 407; Mature: 407
Protein sequence:
>407_residues MKRYLIVFLMCSSLFLVGCGKTEESEPEKPIAVSVQKAIGGEIENTNSFSGTTKVKDETAVTAQTVGTVQEVYVKLGQNV RKGDELLSISSPELENSVKQSKASLDLAKASYSSATGGSLEAQVNQAKTALDNAKIQYEESQRNYDNNKILYEQEVISLD QFKKIEFSLEQTKQQLDSAQRAYDTATSKSIPQAKALAKKQLDQAQVSYNLAMSNLDKLTLTSPVDGTITAKNFDSKEMI TQSQPAFIISNPNILEVDLNVAESDIGKFKKDGNVDVIIEDQRILGKIDYVPSVVDPQTSLYPVKVLVNNTNNKFKAGMS AQVNLSVEKENGAVTVPKKAIFEENGKKYVYIATKDNIAKKHLVQTGIVTEDKIEIKSGVSDKDTVIIGGISLISDGTKI FPVEKEK
Sequences:
>Translated_407_residues MKRYLIVFLMCSSLFLVGCGKTEESEPEKPIAVSVQKAIGGEIENTNSFSGTTKVKDETAVTAQTVGTVQEVYVKLGQNV RKGDELLSISSPELENSVKQSKASLDLAKASYSSATGGSLEAQVNQAKTALDNAKIQYEESQRNYDNNKILYEQEVISLD QFKKIEFSLEQTKQQLDSAQRAYDTATSKSIPQAKALAKKQLDQAQVSYNLAMSNLDKLTLTSPVDGTITAKNFDSKEMI TQSQPAFIISNPNILEVDLNVAESDIGKFKKDGNVDVIIEDQRILGKIDYVPSVVDPQTSLYPVKVLVNNTNNKFKAGMS AQVNLSVEKENGAVTVPKKAIFEENGKKYVYIATKDNIAKKHLVQTGIVTEDKIEIKSGVSDKDTVIIGGISLISDGTKI FPVEKEK >Mature_407_residues MKRYLIVFLMCSSLFLVGCGKTEESEPEKPIAVSVQKAIGGEIENTNSFSGTTKVKDETAVTAQTVGTVQEVYVKLGQNV RKGDELLSISSPELENSVKQSKASLDLAKASYSSATGGSLEAQVNQAKTALDNAKIQYEESQRNYDNNKILYEQEVISLD QFKKIEFSLEQTKQQLDSAQRAYDTATSKSIPQAKALAKKQLDQAQVSYNLAMSNLDKLTLTSPVDGTITAKNFDSKEMI TQSQPAFIISNPNILEVDLNVAESDIGKFKKDGNVDVIIEDQRILGKIDYVPSVVDPQTSLYPVKVLVNNTNNKFKAGMS AQVNLSVEKENGAVTVPKKAIFEENGKKYVYIATKDNIAKKHLVQTGIVTEDKIEIKSGVSDKDTVIIGGISLISDGTKI FPVEKEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]
Homologues:
Organism=Escherichia coli, GI87082036, Length=402, Percent_Identity=22.8855721393035, Blast_Score=72, Evalue=7e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006143 [H]
Pfam domain/function: PF00529 HlyD [H]
EC number: NA
Molecular weight: Translated: 44525; Mature: 44525
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRYLIVFLMCSSLFLVGCGKTEESEPEKPIAVSVQKAIGGEIENTNSFSGTTKVKDETA CCCCEEHHHHHHHHHEEECCCCCCCCCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCHH VTAQTVGTVQEVYVKLGQNVRKGDELLSISSPELENSVKQSKASLDLAKASYSSATGGSL HHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCE EAQVNQAKTALDNAKIQYEESQRNYDNNKILYEQEVISLDQFKKIEFSLEQTKQQLDSAQ EHHHHHHHHHHCCCEEEEEHHHCCCCCCEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHH RAYDTATSKSIPQAKALAKKQLDQAQVSYNLAMSNLDKLTLTSPVDGTITAKNFDSKEMI HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCHHHH TQSQPAFIISNPNILEVDLNVAESDIGKFKKDGNVDVIIEDQRILGKIDYVPSVVDPQTS HCCCCEEEECCCCEEEEECCCCHHHHHHHCCCCCEEEEECCHHHHEEECCCCCCCCCCCC LYPVKVLVNNTNNKFKAGMSAQVNLSVEKENGAVTVPKKAIFEENGKKYVYIATKDNIAK EEEEEEEEECCCCCEECCCCEEEEEEEECCCCEEECCHHHHHHCCCCEEEEEEECCCHHH KHLVQTGIVTEDKIEIKSGVSDKDTVIIGGISLISDGTKIFPVEKEK HHHHHHCCCCCCCCHHHCCCCCCCEEEEECEEEECCCCEEEEECCCC >Mature Secondary Structure MKRYLIVFLMCSSLFLVGCGKTEESEPEKPIAVSVQKAIGGEIENTNSFSGTTKVKDETA CCCCEEHHHHHHHHHEEECCCCCCCCCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCHH VTAQTVGTVQEVYVKLGQNVRKGDELLSISSPELENSVKQSKASLDLAKASYSSATGGSL HHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCE EAQVNQAKTALDNAKIQYEESQRNYDNNKILYEQEVISLDQFKKIEFSLEQTKQQLDSAQ EHHHHHHHHHHCCCEEEEEHHHCCCCCCEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHH RAYDTATSKSIPQAKALAKKQLDQAQVSYNLAMSNLDKLTLTSPVDGTITAKNFDSKEMI HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCHHHH TQSQPAFIISNPNILEVDLNVAESDIGKFKKDGNVDVIIEDQRILGKIDYVPSVVDPQTS HCCCCEEEECCCCEEEEECCCCHHHHHHHCCCCCEEEEECCHHHHEEECCCCCCCCCCCC LYPVKVLVNNTNNKFKAGMSAQVNLSVEKENGAVTVPKKAIFEENGKKYVYIATKDNIAK EEEEEEEEECCCCCEECCCCEEEEEEEECCCCEEECCHHHHHHCCCCEEEEEEECCCHHH KHLVQTGIVTEDKIEIKSGVSDKDTVIIGGISLISDGTKIFPVEKEK HHHHHHCCCCCCCCHHHCCCCCCCEEEEECEEEECCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]