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The map label for this gene is ywbI [H]

Identifier: 126699963

GI number: 126699963

Start: 2714141

End: 2715013

Strand: Direct

Name: ywbI [H]

Synonym: CD2345

Alternate gene names: 126699963

Gene position: 2714141-2715013 (Clockwise)

Preceding gene: 126699953

Following gene: 126699968

Centisome position: 63.26

GC content: 27.03

Gene sequence:

>873_bases
ATGAATATAAACTATTTATACTATTTTCAAACTGTCTGTAAATATAAAAACATGACTAAGGCTGCGGAAAGTATTCATAT
TTCTCAACCATCCATAACATTAGCAATTAAAGAATTAGAAAAAGAACTTGGCTTTGAACTTTTTTACAGAATAGGTAATA
AAATAGAGTTAACGCCTGAAGGAAAAATTTTTTTAGACAAGTCAAAACATTTTATAAAACAATTTGAGGATTTTCAATGT
GACGCACTTGATTTAGGAAAAAAGAGAAAAGCTTCTCTCAAAATAGGTATTCCTACAGTTTTAGGTACGTTTTTGCTTTC
AAAAATACTTCCTAGATTTAATGTAATTTATCCAGATATAGAGCTTAAAATTTTTGAAGTTCCAACATTTGTTGGAGCTA
AAATGATTGAAGAATCTACACTTGATTTTTGTATTGGTATAATTGACAGTGATATTTATGATGATATAGATTCAAAGACA
ATCTATAAAACAGAATTGTACTTAGTTACAAATCCCAAAAATGAATTGGCAAAACATCCCATTATATCGAATTATATGTT
AAAAAATGTACCTTTTGTAATCTTATCTGAAGGTTCTTATCACTATAAGATTATTACAAAAAGACTTGAAAAAGCTAAGC
CAAATATAATTTTACACTCAAATCAACTTTCTACCATACGTTATTTACTAGAAAATGACTTGGCTTCAACAATATTGTAT
AAAGAAATATTTCAAAATACAGAAAATCTCTGTTCAATACCATTAGAACGTGCAATTACTGCAAATATTGGGGTTCTTTG
GAGAAGAAATCAATACATATCTCATAGTATGAAACTTTTTATTGAGTATATGGCATCTATTCATATAAACTAA

Upstream 100 bases:

>100_bases
GTTTAAAACTATTCTATTTTTTTACAACAATATACAAAACTTATGCTATTGTTAATTATATACTTGTCACTAATATGTAA
ATGAAAGGAACTAATACCAA

Downstream 100 bases:

>100_bases
ATTTATATTATACAGATATAATATTTTGTTTAAATACAATGTTAAAATATTTTAATAAATAGTATAGTTTAGAGTATCAG
TATAAAAATACAATATAGAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MNINYLYYFQTVCKYKNMTKAAESIHISQPSITLAIKELEKELGFELFYRIGNKIELTPEGKIFLDKSKHFIKQFEDFQC
DALDLGKKRKASLKIGIPTVLGTFLLSKILPRFNVIYPDIELKIFEVPTFVGAKMIEESTLDFCIGIIDSDIYDDIDSKT
IYKTELYLVTNPKNELAKHPIISNYMLKNVPFVILSEGSYHYKIITKRLEKAKPNIILHSNQLSTIRYLLENDLASTILY
KEIFQNTENLCSIPLERAITANIGVLWRRNQYISHSMKLFIEYMASIHIN

Sequences:

>Translated_290_residues
MNINYLYYFQTVCKYKNMTKAAESIHISQPSITLAIKELEKELGFELFYRIGNKIELTPEGKIFLDKSKHFIKQFEDFQC
DALDLGKKRKASLKIGIPTVLGTFLLSKILPRFNVIYPDIELKIFEVPTFVGAKMIEESTLDFCIGIIDSDIYDDIDSKT
IYKTELYLVTNPKNELAKHPIISNYMLKNVPFVILSEGSYHYKIITKRLEKAKPNIILHSNQLSTIRYLLENDLASTILY
KEIFQNTENLCSIPLERAITANIGVLWRRNQYISHSMKLFIEYMASIHIN
>Mature_290_residues
MNINYLYYFQTVCKYKNMTKAAESIHISQPSITLAIKELEKELGFELFYRIGNKIELTPEGKIFLDKSKHFIKQFEDFQC
DALDLGKKRKASLKIGIPTVLGTFLLSKILPRFNVIYPDIELKIFEVPTFVGAKMIEESTLDFCIGIIDSDIYDDIDSKT
IYKTELYLVTNPKNELAKHPIISNYMLKNVPFVILSEGSYHYKIITKRLEKAKPNIILHSNQLSTIRYLLENDLASTILY
KEIFQNTENLCSIPLERAITANIGVLWRRNQYISHSMKLFIEYMASIHIN

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=289, Percent_Identity=25.2595155709343, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1789506, Length=285, Percent_Identity=20.3508771929825, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788481, Length=296, Percent_Identity=20.6081081081081, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788887, Length=194, Percent_Identity=29.8969072164948, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1790399, Length=146, Percent_Identity=30.8219178082192, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787879, Length=291, Percent_Identity=25.7731958762887, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI2367136, Length=285, Percent_Identity=20.3508771929825, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI145693105, Length=284, Percent_Identity=23.943661971831, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788297, Length=172, Percent_Identity=26.1627906976744, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787530, Length=201, Percent_Identity=24.8756218905473, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788748, Length=210, Percent_Identity=20.952380952381, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790783, Length=208, Percent_Identity=24.0384615384615, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33641; Mature: 33641

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNINYLYYFQTVCKYKNMTKAAESIHISQPSITLAIKELEKELGFELFYRIGNKIELTPE
CCCEEEEHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHCHHHHHHCCCEEEECCC
GKIFLDKSKHFIKQFEDFQCDALDLGKKRKASLKIGIPTVLGTFLLSKILPRFNVIYPDI
CCEEEECCHHHHHHHHCCCCCHHHCCCCCCCEEEECHHHHHHHHHHHHHCCCCEEECCCC
ELKIFEVPTFVGAKMIEESTLDFCIGIIDSDIYDDIDSKTIYKTELYLVTNPKNELAKHP
EEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEEEEEEECCHHHHHCCC
IISNYMLKNVPFVILSEGSYHYKIITKRLEKAKPNIILHSNQLSTIRYLLENDLASTILY
CHHHHHHHCCCEEEECCCCEEEHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHH
KEIFQNTENLCSIPLERAITANIGVLWRRNQYISHSMKLFIEYMASIHIN
HHHHHCCHHHHCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNINYLYYFQTVCKYKNMTKAAESIHISQPSITLAIKELEKELGFELFYRIGNKIELTPE
CCCEEEEHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHCHHHHHHCCCEEEECCC
GKIFLDKSKHFIKQFEDFQCDALDLGKKRKASLKIGIPTVLGTFLLSKILPRFNVIYPDI
CCEEEECCHHHHHHHHCCCCCHHHCCCCCCCEEEECHHHHHHHHHHHHHCCCCEEECCCC
ELKIFEVPTFVGAKMIEESTLDFCIGIIDSDIYDDIDSKTIYKTELYLVTNPKNELAKHP
EEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEEEEEEECCHHHHHCCC
IISNYMLKNVPFVILSEGSYHYKIITKRLEKAKPNIILHSNQLSTIRYLLENDLASTILY
CHHHHHHHCCCEEEECCCCEEEHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHH
KEIFQNTENLCSIPLERAITANIGVLWRRNQYISHSMKLFIEYMASIHIN
HHHHHCCHHHHCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]