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The map label for this gene is int [H]

Identifier: 126699842

GI number: 126699842

Start: 2576028

End: 2576381

Strand: Direct

Name: int [H]

Synonym: CD2225

Alternate gene names: 126699842

Gene position: 2576028-2576381 (Clockwise)

Preceding gene: 126699841

Following gene: 126699843

Centisome position: 60.04

GC content: 32.77

Gene sequence:

>354_bases
ATGTCAACTGAAAAAAGACGAGATAATAAAGATAGAATTTTAAGAACTGGAGAGAGCCAGAGAAAAGATGGAAGATACGC
ATATAAGTATGTATATTCATTTGGTAAAGCACAATTTGTTTACTCTTGGAAACTTGTACCTACTGATAAACCCCCAAAGG
GAAAACGTGATGATATATCATTAAGGGATAAGGAAAAAGCAATACAAAATGACCTTGATGATAGCATTGACACTATTGGT
AAGAAAATGACAGTTTGTCAGTTATACGCTAAAAAGAATGTACTAAGAAAGAATATCCGACTTAACACTAAAAAAGGACG
CCATTATCTTATGAAGATTCTTAACAAGGAGTGA

Upstream 100 bases:

>100_bases
TTGATACACTTGACGTTATCTAATGAAATTGAGCCTTATATGTTATAATATTCATATGACGTATCAAGCTCAATTCGGTT
ATTGAGAGGAGCTTCTTATC

Downstream 100 bases:

>100_bases
TTCTGTGAAGAGATGTATTGTAGTAGTGGAATAGTCAAAAACATAATATATATTAAAGGAGAGATTTAAATATGACTATT
CCAAGTTCAAATAAGGTATA

Product: integrase

Products: NA

Alternate protein names: Integrase [H]

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MSTEKRRDNKDRILRTGESQRKDGRYAYKYVYSFGKAQFVYSWKLVPTDKPPKGKRDDISLRDKEKAIQNDLDDSIDTIG
KKMTVCQLYAKKNVLRKNIRLNTKKGRHYLMKILNKE

Sequences:

>Translated_117_residues
MSTEKRRDNKDRILRTGESQRKDGRYAYKYVYSFGKAQFVYSWKLVPTDKPPKGKRDDISLRDKEKAIQNDLDDSIDTIG
KKMTVCQLYAKKNVLRKNIRLNTKKGRHYLMKILNKE
>Mature_116_residues
STEKRRDNKDRILRTGESQRKDGRYAYKYVYSFGKAQFVYSWKLVPTDKPPKGKRDDISLRDKEKAIQNDLDDSIDTIGK
KMTVCQLYAKKNVLRKNIRLNTKKGRHYLMKILNKE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016177
- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004191
- InterPro:   IPR013087 [H]

Pfam domain/function: PF02920 Integrase_DNA; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 13889; Mature: 13758

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEKRRDNKDRILRTGESQRKDGRYAYKYVYSFGKAQFVYSWKLVPTDKPPKGKRDDIS
CCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCC
LRDKEKAIQNDLDDSIDTIGKKMTVCQLYAKKNVLRKNIRLNTKKGRHYLMKILNKE
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
STEKRRDNKDRILRTGESQRKDGRYAYKYVYSFGKAQFVYSWKLVPTDKPPKGKRDDIS
CCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCC
LRDKEKAIQNDLDDSIDTIGKKMTVCQLYAKKNVLRKNIRLNTKKGRHYLMKILNKE
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12200547 [H]