| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is hyuC [H]
Identifier: 126699644
GI number: 126699644
Start: 2338389
End: 2339606
Strand: Direct
Name: hyuC [H]
Synonym: CD2027
Alternate gene names: 126699644
Gene position: 2338389-2339606 (Clockwise)
Preceding gene: 126699643
Following gene: 126699645
Centisome position: 54.5
GC content: 30.71
Gene sequence:
>1218_bases ATGTTAGGAAAAAAATGTATGGATTATCTACAAACATTAGGAAAAATAAGTTCAACAACAAATGGTCTTACAAGACTTAT CTTGACTCAAGAACATAAAAAATCTATTGATTTAATTAGTTCATGGATGGAAGGTTTAAATCTTGATATTGAAATTGATG ACATTGGAAACGTTATAGGTACATATAAATCAAGCTTTCCAAATGCTCCCACATTAGTAGTTGCATCTCATCAAGATAGT GTAAAGTGTGGAGGTATATTTGATGGTATGTTAGGTATAATAGTGCCTCTAGTTGGTCTTGAAGAAGCAAAACACAATAA TAGGTCTTATCCTTTCAATATTAAGCTAATTGCTTTCGCTGAAGAGGAAGGAACTAGATTTGAAACTTCTTTAATGGGAA GTAAAGTTTTTGCTGGTACTTTTAAAGAGGAACTTCTTAAATCTGTTGATGAAAATGGAATTACACTTGAAGAAGCTGTA ACAAAGTTTGGATTTAATACAAAAAACTTAACAAATTTGCATCCTAGAAAAGATGTAGATGCATATTTAGAATTTCATAT TGAGCAGGGTCCTGTTTTAGAAAATGAATCTCTTCCTGCTGGAATTGTATCAAGTATTACAGGATTTAAAAGTTTTAAGA TATCAGTAAATGGTAAGTCTGGACATGCTGGTACACTTCCAATGAATATAAGACTTGATGCTGGATGTTGTGCCTGTGAA TGTGTATTAGCTATCGAAAAAGTAGCTAAAACGACTGCTGATTTGGTTGCTACTGTAGGAAAGATGAATTTCTATCCATC TTCATCAAATGTGGTACCTGAAAGAGCTGAATTTACTCTTGATGTACGCTCTTGTTCACAAGAAATTCTTGATAATTCTG TAGAAAAGATATTTAATGAAATATCACATATATGTGAAAATAGAAAACTTAATTATACAAGTGAACTTGCTTTTGAAAAT GTTCCTGTACCATGTTCTAATAAAATAACAAAAATCATAGAAAAAAGTTTTATAGATTTAAATCTTAATCCTTTTTATAT TTATAGTGGTGCTGGCCATGATGCTCAGGAAATGGATAATATAACTGATATTGGTATGGTATTTATAAGATGCGCTGGGG GCGTAAGTCATAATCCTAATGAAAGTGTTTCTGTAGATGACTTGGATACTGCTGTAAAAATATTTTTAAAAATACTAGAT AATCTTGATTTAAAATAA
Upstream 100 bases:
>100_bases AGTATTTTACTATACATACAAAATTATTTGAAAGTTCAAAAATTATAAGTATAAAAGCTAATCTTAGCTTAAATAAAAAT TATATTTTTAGGAGGTAAAT
Downstream 100 bases:
>100_bases TTCTTATATAAGAAAGTATATTAAAATATATAATCTAAAAAATCACTTTATATTTATATTATATAAGTGTACAATATAAT CTATTATAAAATATAATTTT
Product: N-carbamoyl-L-amino acid hydrolase
Products: NA
Alternate protein names: ORF4 [H]
Number of amino acids: Translated: 405; Mature: 405
Protein sequence:
>405_residues MLGKKCMDYLQTLGKISSTTNGLTRLILTQEHKKSIDLISSWMEGLNLDIEIDDIGNVIGTYKSSFPNAPTLVVASHQDS VKCGGIFDGMLGIIVPLVGLEEAKHNNRSYPFNIKLIAFAEEEGTRFETSLMGSKVFAGTFKEELLKSVDENGITLEEAV TKFGFNTKNLTNLHPRKDVDAYLEFHIEQGPVLENESLPAGIVSSITGFKSFKISVNGKSGHAGTLPMNIRLDAGCCACE CVLAIEKVAKTTADLVATVGKMNFYPSSSNVVPERAEFTLDVRSCSQEILDNSVEKIFNEISHICENRKLNYTSELAFEN VPVPCSNKITKIIEKSFIDLNLNPFYIYSGAGHDAQEMDNITDIGMVFIRCAGGVSHNPNESVSVDDLDTAVKIFLKILD NLDLK
Sequences:
>Translated_405_residues MLGKKCMDYLQTLGKISSTTNGLTRLILTQEHKKSIDLISSWMEGLNLDIEIDDIGNVIGTYKSSFPNAPTLVVASHQDS VKCGGIFDGMLGIIVPLVGLEEAKHNNRSYPFNIKLIAFAEEEGTRFETSLMGSKVFAGTFKEELLKSVDENGITLEEAV TKFGFNTKNLTNLHPRKDVDAYLEFHIEQGPVLENESLPAGIVSSITGFKSFKISVNGKSGHAGTLPMNIRLDAGCCACE CVLAIEKVAKTTADLVATVGKMNFYPSSSNVVPERAEFTLDVRSCSQEILDNSVEKIFNEISHICENRKLNYTSELAFEN VPVPCSNKITKIIEKSFIDLNLNPFYIYSGAGHDAQEMDNITDIGMVFIRCAGGVSHNPNESVSVDDLDTAVKIFLKILD NLDLK >Mature_405_residues MLGKKCMDYLQTLGKISSTTNGLTRLILTQEHKKSIDLISSWMEGLNLDIEIDDIGNVIGTYKSSFPNAPTLVVASHQDS VKCGGIFDGMLGIIVPLVGLEEAKHNNRSYPFNIKLIAFAEEEGTRFETSLMGSKVFAGTFKEELLKSVDENGITLEEAV TKFGFNTKNLTNLHPRKDVDAYLEFHIEQGPVLENESLPAGIVSSITGFKSFKISVNGKSGHAGTLPMNIRLDAGCCACE CVLAIEKVAKTTADLVATVGKMNFYPSSSNVVPERAEFTLDVRSCSQEILDNSVEKIFNEISHICENRKLNYTSELAFEN VPVPCSNKITKIIEKSFIDLNLNPFYIYSGAGHDAQEMDNITDIGMVFIRCAGGVSHNPNESVSVDDLDTAVKIFLKILD NLDLK
Specific function: Converts N-carbamyl-L-amino acids to L-amino acids [H]
COG id: COG0624
COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M20 family [H]
Homologues:
Organism=Escherichia coli, GI1786726, Length=404, Percent_Identity=29.7029702970297, Blast_Score=199, Evalue=3e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010158 - InterPro: IPR002933 - InterPro: IPR011650 [H]
Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]
EC number: 3.5.3.- [C]
Molecular weight: Translated: 44437; Mature: 44437
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGKKCMDYLQTLGKISSTTNGLTRLILTQEHKKSIDLISSWMEGLNLDIEIDDIGNVIG CCCHHHHHHHHHHHHHHCCCCHHEEEEEEHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHH TYKSSFPNAPTLVVASHQDSVKCGGIFDGMLGIIVPLVGLEEAKHNNRSYPFNIKLIAFA HHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCHHHHHCCCCCCCEEEEEEEEE EEEGTRFETSLMGSKVFAGTFKEELLKSVDENGITLEEAVTKFGFNTKNLTNLHPRKDVD CCCCCEEHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHH AYLEFHIEQGPVLENESLPAGIVSSITGFKSFKISVNGKSGHAGTLPMNIRLDAGCCACE HHHEEEECCCCEECCCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECCCHHHHH CVLAIEKVAKTTADLVATVGKMNFYPSSSNVVPERAEFTLDVRSCSQEILDNSVEKIFNE HHHHHHHHHHHHHHHHHHHHHCEECCCCCCCCCCCHHEEEEHHHHHHHHHHHHHHHHHHH ISHICENRKLNYTSELAFENVPVPCSNKITKIIEKSFIDLNLNPFYIYSGAGHDAQEMDN HHHHHCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHEEECCCEEEEECCCCCCHHHHHH ITDIGMVFIRCAGGVSHNPNESVSVDDLDTAVKIFLKILDNLDLK HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MLGKKCMDYLQTLGKISSTTNGLTRLILTQEHKKSIDLISSWMEGLNLDIEIDDIGNVIG CCCHHHHHHHHHHHHHHCCCCHHEEEEEEHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHH TYKSSFPNAPTLVVASHQDSVKCGGIFDGMLGIIVPLVGLEEAKHNNRSYPFNIKLIAFA HHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCHHHHHCCCCCCCEEEEEEEEE EEEGTRFETSLMGSKVFAGTFKEELLKSVDENGITLEEAVTKFGFNTKNLTNLHPRKDVD CCCCCEEHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHH AYLEFHIEQGPVLENESLPAGIVSSITGFKSFKISVNGKSGHAGTLPMNIRLDAGCCACE HHHEEEECCCCEECCCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECCCHHHHH CVLAIEKVAKTTADLVATVGKMNFYPSSSNVVPERAEFTLDVRSCSQEILDNSVEKIFNE HHHHHHHHHHHHHHHHHHHHHCEECCCCCCCCCCCHHEEEEHHHHHHHHHHHHHHHHHHH ISHICENRKLNYTSELAFENVPVPCSNKITKIIEKSFIDLNLNPFYIYSGAGHDAQEMDN HHHHHCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHEEECCCEEEEECCCCCCHHHHHH ITDIGMVFIRCAGGVSHNPNESVSVDDLDTAVKIFLKILDNLDLK HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1732229 [H]