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The map label for this gene is cspC [H]

Identifier: 126699599

GI number: 126699599

Start: 2298045

End: 2298245

Strand: Direct

Name: cspC [H]

Synonym: CD1990B

Alternate gene names: 126699599

Gene position: 2298045-2298245 (Clockwise)

Preceding gene: 126699593

Following gene: 126699600

Centisome position: 53.56

GC content: 30.35

Gene sequence:

>201_bases
ATGAATAATGGAATAGTGAAATGGTTTAATAATGAAAAAGGATTCGGTTTTATATCAATGGAAGGTAGAGATGATGTGTT
TGCTCATTTCTCAGCTATACAAACTTCAGGATTTAAATCATTAGAAGAAGGTCAACAAGTAAGCTTTGATATAGTTAAAG
GTGCTAGAGGTCCTCAAGCAGAAAATATAACTATATTATAA

Upstream 100 bases:

>100_bases
ATTAAGTAGACATTTCTATTAATCTATGATACAATAGTATTTGTGGTAATACACAATTAAATCAAGTATATCTTGATATA
GGTTAATAGGAGTATTTTTA

Downstream 100 bases:

>100_bases
TATATAGATTTTTCGGGAAAGACTCTTTTTAGAGTCTTTTTTTATTGTTAATATATGTAAGATAATCATTGGTGAAGTAA
ATAAGGTATATTGAGTAATG

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MNNGIVKWFNNEKGFGFISMEGRDDVFAHFSAIQTSGFKSLEEGQQVSFDIVKGARGPQAENITIL

Sequences:

>Translated_66_residues
MNNGIVKWFNNEKGFGFISMEGRDDVFAHFSAIQTSGFKSLEEGQQVSFDIVKGARGPQAENITIL
>Mature_66_residues
MNNGIVKWFNNEKGFGFISMEGRDDVFAHFSAIQTSGFKSLEEGQQVSFDIVKGARGPQAENITIL

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=64.6153846153846, Blast_Score=86, Evalue=6e-19,
Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=64.0625, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=58.7301587301587, Blast_Score=79, Evalue=7e-17,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=59.375, Blast_Score=76, Evalue=4e-16,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=54.6875, Blast_Score=75, Evalue=7e-16,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=56.25, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=52.3076923076923, Blast_Score=73, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7310; Mature: 7310

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNGIVKWFNNEKGFGFISMEGRDDVFAHFSAIQTSGFKSLEEGQQVSFDIVKGARGPQA
CCCCEEEEECCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCC
ENITIL
CCEEEC
>Mature Secondary Structure
MNNGIVKWFNNEKGFGFISMEGRDDVFAHFSAIQTSGFKSLEEGQQVSFDIVKGARGPQA
CCCCEEEEECCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCC
ENITIL
CCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8631682 [H]