Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

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The map label for this gene is 126699511

Identifier: 126699511

GI number: 126699511

Start: 2203327

End: 2203836

Strand: Direct

Name: 126699511

Synonym: CD1901

Alternate gene names: NA

Gene position: 2203327-2203836 (Clockwise)

Preceding gene: 126699506

Following gene: 126699513

Centisome position: 51.36

GC content: 34.31

Gene sequence:

>510_bases
ATGTTAAGCGAAAACATTAAAACAATCAGGAAGTCAAAAGGACTTTCACAACAAGAACTTGCTATAAAACTGAATGTAGT
GCGACAAACAATATCTAAATGGGAACAAGGACTGTCGGTTCCCGATTCTGATATGTTGATTTCCATATCAGAGGTGCTTG
AAACGCCCGTAAGCACTTTACTTGGAGAAACTATTGTTGAGTCGGAAGTTGATAACTTAAAAGTGATTTCTGAAAAATTA
GAGATTATAAACTTGCAACTTGCACAAAGAAAAAACATGAGAAGAAAAATGTTTCATTGGTTATTTATTTTATTATGTGC
AGTCATATTAATAGTTTTTGTGGTCTTAGGGAGACTAAATAGTCCTTACTTGGATTGGAATTATACCGACCCTGAAACCG
CTGTTTTTGGAGTAGCTTTTCATGCTTTTGAGTGGCTATTTGTCAGATTAGTACCGATTGTCCTTATAGGAGCAATTATT
GGAATCTTTTTGACACGTAAGAAAATATGA

Upstream 100 bases:

>100_bases
AAAGAAGAAATTTACTTGAATGTTAAAATGCGTTGCTTGAAGCAATGGGCAGTTTTGCCTATAATATCGGTAACAACTGA
AAGAAAGGTGGTTAGCCCTA

Downstream 100 bases:

>100_bases
AGTAACTCTGCTTTTTATAATACAGCAAGCGTTCCTTAAAAGCGTCATTCTACATGGCAATCGAGGACGACTATGTAAGG
AAGAACCTTTTTGATTTCCA

Product: phage repressor

Products: NA

Alternate protein names: Transcriptional Regulator; Phage Repressor

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLLGETIVESEVDNLKVISEKL
EIINLQLAQRKNMRRKMFHWLFILLCAVILIVFVVLGRLNSPYLDWNYTDPETAVFGVAFHAFEWLFVRLVPIVLIGAII
GIFLTRKKI

Sequences:

>Translated_169_residues
MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLLGETIVESEVDNLKVISEKL
EIINLQLAQRKNMRRKMFHWLFILLCAVILIVFVVLGRLNSPYLDWNYTDPETAVFGVAFHAFEWLFVRLVPIVLIGAII
GIFLTRKKI
>Mature_169_residues
MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLLGETIVESEVDNLKVISEKL
EIINLQLAQRKNMRRKMFHWLFILLCAVILIVFVVLGRLNSPYLDWNYTDPETAVFGVAFHAFEWLFVRLVPIVLIGAII
GIFLTRKKI

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19308; Mature: 19308

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEHHHHHHHHHHHH
LGETIVESEVDNLKVISEKLEIINLQLAQRKNMRRKMFHWLFILLCAVILIVFVVLGRLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SPYLDWNYTDPETAVFGVAFHAFEWLFVRLVPIVLIGAIIGIFLTRKKI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEHHHHHHHHHHHH
LGETIVESEVDNLKVISEKLEIINLQLAQRKNMRRKMFHWLFILLCAVILIVFVVLGRLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SPYLDWNYTDPETAVFGVAFHAFEWLFVRLVPIVLIGAIIGIFLTRKKI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA