| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126699504
Identifier: 126699504
GI number: 126699504
Start: 2198911
End: 2199294
Strand: Direct
Name: 126699504
Synonym: CD1894
Alternate gene names: NA
Gene position: 2198911-2199294 (Clockwise)
Preceding gene: 126699502
Following gene: 126699505
Centisome position: 51.25
GC content: 27.08
Gene sequence:
>384_bases ATGTCTACAGACAAAGTTGTTGGAATCATAGATGAAGAAACGGCAGAACTTGCAGGAATTGAATATACTGGTAAAATTTA TGCTTCTTCTGGTGTTATAAAACATATAAAGAAAAAACATAGATGTCAACTGAGTAAGGATATTTTTAATGATATAATAG ATACTATAAAAATGGTATTAAAGTCACCTGAATATATAGGAAGTCATCCTAAAAAACCTGGAAAAAGTGTGGAGTTTATA AAAAAAATTGATGATTATATTTTAGTAGCTACAGAATTAGATACAAAAAAAGGATATTTATATGTATCTTCAATGTATGC TATAAAAGAAGCAAAATTAGAAAGTAGAGTAAACAGTGGAAGAGTAAAACAATATGATGGTTAA
Upstream 100 bases:
>100_bases TTTTCTTTTTAGAATAAACTATACTTTAAATATAGATATTTAATTTAAATAAATTTTACAGTATTAATAGTAAATTATCT TAGAAAGGAATGTGCTTTAT
Downstream 100 bases:
>100_bases CATAATATTATTAATTTTCCCTAAAATATTGAAAAATATTATTATATAAGTTATAATATTAATATACACGTAGATATTTA TTAGTTAGATTTGAGGTTGG
Product: plasmid-like protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 127; Mature: 126
Protein sequence:
>127_residues MSTDKVVGIIDEETAELAGIEYTGKIYASSGVIKHIKKKHRCQLSKDIFNDIIDTIKMVLKSPEYIGSHPKKPGKSVEFI KKIDDYILVATELDTKKGYLYVSSMYAIKEAKLESRVNSGRVKQYDG
Sequences:
>Translated_127_residues MSTDKVVGIIDEETAELAGIEYTGKIYASSGVIKHIKKKHRCQLSKDIFNDIIDTIKMVLKSPEYIGSHPKKPGKSVEFI KKIDDYILVATELDTKKGYLYVSSMYAIKEAKLESRVNSGRVKQYDG >Mature_126_residues STDKVVGIIDEETAELAGIEYTGKIYASSGVIKHIKKKHRCQLSKDIFNDIIDTIKMVLKSPEYIGSHPKKPGKSVEFIK KIDDYILVATELDTKKGYLYVSSMYAIKEAKLESRVNSGRVKQYDG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14290; Mature: 14159
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTDKVVGIIDEETAELAGIEYTGKIYASSGVIKHIKKKHRCQLSKDIFNDIIDTIKMVL CCCCCEEEEECCCCHHHCCCEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSPEYIGSHPKKPGKSVEFIKKIDDYILVATELDTKKGYLYVSSMYAIKEAKLESRVNSG CCCHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHCCC RVKQYDG CEECCCC >Mature Secondary Structure STDKVVGIIDEETAELAGIEYTGKIYASSGVIKHIKKKHRCQLSKDIFNDIIDTIKMVL CCCCEEEEECCCCHHHCCCEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSPEYIGSHPKKPGKSVEFIKKIDDYILVATELDTKKGYLYVSSMYAIKEAKLESRVNSG CCCHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHCCC RVKQYDG CEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA