Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

Click here to switch to the map view.

The map label for this gene is 126699504

Identifier: 126699504

GI number: 126699504

Start: 2198911

End: 2199294

Strand: Direct

Name: 126699504

Synonym: CD1894

Alternate gene names: NA

Gene position: 2198911-2199294 (Clockwise)

Preceding gene: 126699502

Following gene: 126699505

Centisome position: 51.25

GC content: 27.08

Gene sequence:

>384_bases
ATGTCTACAGACAAAGTTGTTGGAATCATAGATGAAGAAACGGCAGAACTTGCAGGAATTGAATATACTGGTAAAATTTA
TGCTTCTTCTGGTGTTATAAAACATATAAAGAAAAAACATAGATGTCAACTGAGTAAGGATATTTTTAATGATATAATAG
ATACTATAAAAATGGTATTAAAGTCACCTGAATATATAGGAAGTCATCCTAAAAAACCTGGAAAAAGTGTGGAGTTTATA
AAAAAAATTGATGATTATATTTTAGTAGCTACAGAATTAGATACAAAAAAAGGATATTTATATGTATCTTCAATGTATGC
TATAAAAGAAGCAAAATTAGAAAGTAGAGTAAACAGTGGAAGAGTAAAACAATATGATGGTTAA

Upstream 100 bases:

>100_bases
TTTTCTTTTTAGAATAAACTATACTTTAAATATAGATATTTAATTTAAATAAATTTTACAGTATTAATAGTAAATTATCT
TAGAAAGGAATGTGCTTTAT

Downstream 100 bases:

>100_bases
CATAATATTATTAATTTTCCCTAAAATATTGAAAAATATTATTATATAAGTTATAATATTAATATACACGTAGATATTTA
TTAGTTAGATTTGAGGTTGG

Product: plasmid-like protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MSTDKVVGIIDEETAELAGIEYTGKIYASSGVIKHIKKKHRCQLSKDIFNDIIDTIKMVLKSPEYIGSHPKKPGKSVEFI
KKIDDYILVATELDTKKGYLYVSSMYAIKEAKLESRVNSGRVKQYDG

Sequences:

>Translated_127_residues
MSTDKVVGIIDEETAELAGIEYTGKIYASSGVIKHIKKKHRCQLSKDIFNDIIDTIKMVLKSPEYIGSHPKKPGKSVEFI
KKIDDYILVATELDTKKGYLYVSSMYAIKEAKLESRVNSGRVKQYDG
>Mature_126_residues
STDKVVGIIDEETAELAGIEYTGKIYASSGVIKHIKKKHRCQLSKDIFNDIIDTIKMVLKSPEYIGSHPKKPGKSVEFIK
KIDDYILVATELDTKKGYLYVSSMYAIKEAKLESRVNSGRVKQYDG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14290; Mature: 14159

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDKVVGIIDEETAELAGIEYTGKIYASSGVIKHIKKKHRCQLSKDIFNDIIDTIKMVL
CCCCCEEEEECCCCHHHCCCEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSPEYIGSHPKKPGKSVEFIKKIDDYILVATELDTKKGYLYVSSMYAIKEAKLESRVNSG
CCCHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHCCC
RVKQYDG
CEECCCC
>Mature Secondary Structure 
STDKVVGIIDEETAELAGIEYTGKIYASSGVIKHIKKKHRCQLSKDIFNDIIDTIKMVL
CCCCEEEEECCCCHHHCCCEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSPEYIGSHPKKPGKSVEFIKKIDDYILVATELDTKKGYLYVSSMYAIKEAKLESRVNSG
CCCHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHCCC
RVKQYDG
CEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA