| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126699477
Identifier: 126699477
GI number: 126699477
Start: 2167698
End: 2168765
Strand: Direct
Name: 126699477
Synonym: CD1866
Alternate gene names: NA
Gene position: 2167698-2168765 (Clockwise)
Preceding gene: 126699476
Following gene: 126699478
Centisome position: 50.53
GC content: 30.43
Gene sequence:
>1068_bases ATGAGTGGGAAATTATATATAGCTGCTGCTGGATCTGGAAAAACAAGAAAAATTATAGAGGATTCTCTTAATACTCATAA AAAAATACTAATCCTAACATATACTATTACAAATGAGCAACAAATAATTAGCCGAATTAAGAATAAAGTTGGTGTAATTC CTAATAATATTACAGTTTCTACATGGTTTTCTTTTTTGTTAAAAGATGGTATTAGACCTTATCAAGGAAGTAGATTTAAG GAACGAATTGAAGGAATTATATTTGTAAATGGACAGAACAATACGTACGTAAAGAAAACATCCAACAAATATTTTGCCAA AGATAACAGGGTATATACTGATAAATTATCAGAGTGTGTTGTAGAGTTAAATGATAAATGTAATGGAAAAGTTTTTGAAA GAATCAGTGGAATGTATGACTGTATATATGTTGATGAAGTCCAAGATATGGTGGGGTATGATTTGGAAATATTAAAGTGT TTAATAGCTTCAAGAATTGAAGTGATAATGGTCGGGGATCCTAGACAATGCACATATTCAACTCACTCATCAAAAAAATA TAAAAAATATAGTTGTGGGAAAATCGATGAGTTTTTAAAAAATGAGTGCAGAAAATTAGATGTAAGAATTGATGAAACTA CACTTAATTGTACTTATAGAAATAATGATATTATATGTAAATTTGCGAATAGTCTGTATCCAGAGAGAACATCTACAAAT TTTGTGCGTAGAGCTGAAGATGAATCAGATGGTGTTATGATAATTGATAAAGCAGATGTAGAGAAGTATTTGCAGAAATT TAATGCAATGCAGTTGAGAGAAAATAAAAGGACATCCGTCAATAATGAATATCCATATTATAATTTTGGAGAATCAAAAG GCTTGGAATTCCAACGAGTACTTATATATCCGACTCAACCGATGTGGGATTGGATTATTAACAATAACACATCTCTAAAA GAACAAAGTAAGGCTAGATTATATGTTGCTGTTACACGTGCTGAGAATAGTGTTGTTATTGTACGTAAAGATGCACGACC TTGTAGTCTACCAGTGGTGAAATTATAA
Upstream 100 bases:
>100_bases TTAAATATATGAAGGGGCATAAAACAGAAGTTGCTTTAAAGATTTTTGAAAGTGATAAAGCTATAGAATTTCCACAATAT ATAAAGGAGGGTATTCTAAT
Downstream 100 bases:
>100_bases CTTTTATTGTGAGGAGATGAAATTTAAATGGCTAATGATATAAAATTTGAAATTTCTGTTCCAGCGGATGAAGAGGGATA TGTTCAATTAAAATGTCCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 355; Mature: 354
Protein sequence:
>355_residues MSGKLYIAAAGSGKTRKIIEDSLNTHKKILILTYTITNEQQIISRIKNKVGVIPNNITVSTWFSFLLKDGIRPYQGSRFK ERIEGIIFVNGQNNTYVKKTSNKYFAKDNRVYTDKLSECVVELNDKCNGKVFERISGMYDCIYVDEVQDMVGYDLEILKC LIASRIEVIMVGDPRQCTYSTHSSKKYKKYSCGKIDEFLKNECRKLDVRIDETTLNCTYRNNDIICKFANSLYPERTSTN FVRRAEDESDGVMIIDKADVEKYLQKFNAMQLRENKRTSVNNEYPYYNFGESKGLEFQRVLIYPTQPMWDWIINNNTSLK EQSKARLYVAVTRAENSVVIVRKDARPCSLPVVKL
Sequences:
>Translated_355_residues MSGKLYIAAAGSGKTRKIIEDSLNTHKKILILTYTITNEQQIISRIKNKVGVIPNNITVSTWFSFLLKDGIRPYQGSRFK ERIEGIIFVNGQNNTYVKKTSNKYFAKDNRVYTDKLSECVVELNDKCNGKVFERISGMYDCIYVDEVQDMVGYDLEILKC LIASRIEVIMVGDPRQCTYSTHSSKKYKKYSCGKIDEFLKNECRKLDVRIDETTLNCTYRNNDIICKFANSLYPERTSTN FVRRAEDESDGVMIIDKADVEKYLQKFNAMQLRENKRTSVNNEYPYYNFGESKGLEFQRVLIYPTQPMWDWIINNNTSLK EQSKARLYVAVTRAENSVVIVRKDARPCSLPVVKL >Mature_354_residues SGKLYIAAAGSGKTRKIIEDSLNTHKKILILTYTITNEQQIISRIKNKVGVIPNNITVSTWFSFLLKDGIRPYQGSRFKE RIEGIIFVNGQNNTYVKKTSNKYFAKDNRVYTDKLSECVVELNDKCNGKVFERISGMYDCIYVDEVQDMVGYDLEILKCL IASRIEVIMVGDPRQCTYSTHSSKKYKKYSCGKIDEFLKNECRKLDVRIDETTLNCTYRNNDIICKFANSLYPERTSTNF VRRAEDESDGVMIIDKADVEKYLQKFNAMQLRENKRTSVNNEYPYYNFGESKGLEFQRVLIYPTQPMWDWIINNNTSLKE QSKARLYVAVTRAENSVVIVRKDARPCSLPVVKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41098; Mature: 40966
Theoretical pI: Translated: 9.28; Mature: 9.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGKLYIAAAGSGKTRKIIEDSLNTHKKILILTYTITNEQQIISRIKNKVGVIPNNITVS CCCEEEEEECCCCCCHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHHCCCCCCCEEHH TWFSFLLKDGIRPYQGSRFKERIEGIIFVNGQNNTYVKKTSNKYFAKDNRVYTDKLSECV HHHHHHHHCCCCCCCCCHHHHHCCEEEEEECCCCEEEEECCCCEEECCCEEHHHHHHHHH VELNDKCNGKVFERISGMYDCIYVDEVQDMVGYDLEILKCLIASRIEVIMVGDPRQCTYS HHHCCCCCCHHHHHHCCCEEEEEHHHHHHHHCCCHHHHHHHHHCCEEEEEECCCCCCEEC THSSKKYKKYSCGKIDEFLKNECRKLDVRIDETTLNCTYRNNDIICKFANSLYPERTSTN CCCCCCCCCCCCCHHHHHHHHHHHEEEEEEECEEEEEEEECCCEEEEECHHCCCCCCCCC FVRRAEDESDGVMIIDKADVEKYLQKFNAMQLRENKRTSVNNEYPYYNFGESKGLEFQRV HHHCCCCCCCCEEEEEHHHHHHHHHHHCHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEE LIYPTQPMWDWIINNNTSLKEQSKARLYVAVTRAENSVVIVRKDARPCSLPVVKL EEEECCCCEEEEECCCCCCCCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCEEC >Mature Secondary Structure SGKLYIAAAGSGKTRKIIEDSLNTHKKILILTYTITNEQQIISRIKNKVGVIPNNITVS CCEEEEEECCCCCCHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHHCCCCCCCEEHH TWFSFLLKDGIRPYQGSRFKERIEGIIFVNGQNNTYVKKTSNKYFAKDNRVYTDKLSECV HHHHHHHHCCCCCCCCCHHHHHCCEEEEEECCCCEEEEECCCCEEECCCEEHHHHHHHHH VELNDKCNGKVFERISGMYDCIYVDEVQDMVGYDLEILKCLIASRIEVIMVGDPRQCTYS HHHCCCCCCHHHHHHCCCEEEEEHHHHHHHHCCCHHHHHHHHHCCEEEEEECCCCCCEEC THSSKKYKKYSCGKIDEFLKNECRKLDVRIDETTLNCTYRNNDIICKFANSLYPERTSTN CCCCCCCCCCCCCHHHHHHHHHHHEEEEEEECEEEEEEEECCCEEEEECHHCCCCCCCCC FVRRAEDESDGVMIIDKADVEKYLQKFNAMQLRENKRTSVNNEYPYYNFGESKGLEFQRV HHHCCCCCCCCEEEEEHHHHHHHHHHHCHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEE LIYPTQPMWDWIINNNTSLKEQSKARLYVAVTRAENSVVIVRKDARPCSLPVVKL EEEECCCCEEEEECCCCCCCCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA