| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
Click here to switch to the map view.
The map label for this gene is pheA [H]
Identifier: 126699445
GI number: 126699445
Start: 2125730
End: 2126926
Strand: Direct
Name: pheA [H]
Synonym: CD1836
Alternate gene names: 126699445
Gene position: 2125730-2126926 (Clockwise)
Preceding gene: 126699444
Following gene: 126699446
Centisome position: 49.55
GC content: 26.23
Gene sequence:
>1197_bases ATGGAGGATTTAACGAGATATAGAAATGAGATTGACAATATAGATAAAGAGCTTATTCAATTATTTGAAAAGAGAATGAA TACAGTTCTTGAAATTGCCAGACATAAAATGAAAAATAATACTACTATACTTCAAAAAGATAGAGAAGAAAAAGTACTAA GTAGAGCTGTAGATAATTTAGATAATAAAGCATATTCACAAGAAACGGTACAGTTTTTTAATTCTATAATGGAAATTAGT AGAGGATTACAAAAAAGATTGATAGATAATGATGGTGAGCAGAAAATCGAGTTTGGTTTAGATTCATCAAATAAGAATTT TGATTTGTCAAATGTAAATAAATATAAGTCTTTAAAAGATGAATTAAATAAAAAAAATATCCTAGTAGGGTTTCCTGGAA AATCAGGTTCATTTACAGAAGAAGCACTAAATAAATTCTTCAACAAAAAAATATCAAAAAAACAATTTAAAGAATTTGAA GATGTTTTCATAGCACTTAAAAATAAAGAAATAAACTATGGAATAATCCCCATAGAAAATTCATCTACAGGAGCTATCTC TGAAACTTATGACCTTTTGAGAAAGTACGGTTTTTATATAGTTGGAGAAGAATGTATAAAAATAGACCAAAATTTAATAG GGATAAAAGACACAAAGCTTGAAGATATAAAAGAAATATATTCTCATCCACAAGGTATAGGACAATGTAGTGAATTTTTA AAACAAAATAGTACATGGAAATTGATACCATTTAATAACACAGCAACAAGTGCAGAACTTGTAAGAAAACTTCAAGATAA AACAAAAGCAGCAATTGCAAGCAAAAAAGCTGCAAGTATTTATGGATTAGAAATAATAAGTCCTTGTATAAATGATATAG CAAACAACTATACAAGATTTGTAGTAATCAGTAATCAAATACACATTGAAGAAGAATCAAACAAAATGAGTGTAGTATTT TCTGTTGAACATGAAGCAGGAAAACTTTATAAAGTACTTGGATACTTTGCTAAAAATAATATAAATATGACAAAAATAGA ATCAAGACCTATGAAAAATGCCTCATGGAGATATTTCTTTTATATAGATTTTGAGTGTTCTATATACAATGCTAAAGTGT ACGATTTATTAGAATTGATAGAACATAATACAGCATATTTTAAATTTATGGGAGTATATAAAAATAAAACTGAATAG
Upstream 100 bases:
>100_bases TTAAAGGCAGACATGACCCTTGTATAGTTCAAAGGGCTATACCTGTAATAGAAGCAGTAACAGCCATTGGAATTTTTGAT TTGATGAAAGGACGATAATA
Downstream 100 bases:
>100_bases ATAAGATAAATTTTTATTTAATTTATAATTATTAGGAGGTGTAAGTATGAATTTTTTCGGTCTAGTAGGTGAAAAACTCT CTCACAGTGTTTCACCTCAA
Product: P-protein
Products: NA
Alternate protein names: Chorismate mutase; CM; Prephenate dehydratase; PDT [H]
Number of amino acids: Translated: 398; Mature: 398
Protein sequence:
>398_residues MEDLTRYRNEIDNIDKELIQLFEKRMNTVLEIARHKMKNNTTILQKDREEKVLSRAVDNLDNKAYSQETVQFFNSIMEIS RGLQKRLIDNDGEQKIEFGLDSSNKNFDLSNVNKYKSLKDELNKKNILVGFPGKSGSFTEEALNKFFNKKISKKQFKEFE DVFIALKNKEINYGIIPIENSSTGAISETYDLLRKYGFYIVGEECIKIDQNLIGIKDTKLEDIKEIYSHPQGIGQCSEFL KQNSTWKLIPFNNTATSAELVRKLQDKTKAAIASKKAASIYGLEIISPCINDIANNYTRFVVISNQIHIEEESNKMSVVF SVEHEAGKLYKVLGYFAKNNINMTKIESRPMKNASWRYFFYIDFECSIYNAKVYDLLELIEHNTAYFKFMGVYKNKTE
Sequences:
>Translated_398_residues MEDLTRYRNEIDNIDKELIQLFEKRMNTVLEIARHKMKNNTTILQKDREEKVLSRAVDNLDNKAYSQETVQFFNSIMEIS RGLQKRLIDNDGEQKIEFGLDSSNKNFDLSNVNKYKSLKDELNKKNILVGFPGKSGSFTEEALNKFFNKKISKKQFKEFE DVFIALKNKEINYGIIPIENSSTGAISETYDLLRKYGFYIVGEECIKIDQNLIGIKDTKLEDIKEIYSHPQGIGQCSEFL KQNSTWKLIPFNNTATSAELVRKLQDKTKAAIASKKAASIYGLEIISPCINDIANNYTRFVVISNQIHIEEESNKMSVVF SVEHEAGKLYKVLGYFAKNNINMTKIESRPMKNASWRYFFYIDFECSIYNAKVYDLLELIEHNTAYFKFMGVYKNKTE >Mature_398_residues MEDLTRYRNEIDNIDKELIQLFEKRMNTVLEIARHKMKNNTTILQKDREEKVLSRAVDNLDNKAYSQETVQFFNSIMEIS RGLQKRLIDNDGEQKIEFGLDSSNKNFDLSNVNKYKSLKDELNKKNILVGFPGKSGSFTEEALNKFFNKKISKKQFKEFE DVFIALKNKEINYGIIPIENSSTGAISETYDLLRKYGFYIVGEECIKIDQNLIGIKDTKLEDIKEIYSHPQGIGQCSEFL KQNSTWKLIPFNNTATSAELVRKLQDKTKAAIASKKAASIYGLEIISPCINDIANNYTRFVVISNQIHIEEESNKMSVVF SVEHEAGKLYKVLGYFAKNNINMTKIESRPMKNASWRYFFYIDFECSIYNAKVYDLLELIEHNTAYFKFMGVYKNKTE
Specific function: L-phenylalanine biosynthesis. [C]
COG id: COG0077
COG function: function code E; Prephenate dehydratase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 prephenate dehydratase domain [H]
Homologues:
Organism=Escherichia coli, GI1788951, Length=403, Percent_Identity=27.0471464019851, Blast_Score=171, Evalue=1e-43, Organism=Saccharomyces cerevisiae, GI6324013, Length=309, Percent_Identity=25.8899676375405, Blast_Score=75, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008242 - InterPro: IPR002701 - InterPro: IPR020822 - InterPro: IPR010952 - InterPro: IPR001086 - InterPro: IPR018528 [H]
Pfam domain/function: PF01817 CM_2; PF00800 PDT [H]
EC number: =5.4.99.5; =4.2.1.51 [H]
Molecular weight: Translated: 46177; Mature: 46177
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: PS00857 PREPHENATE_DEHYDR_1 ; PS00858 PREPHENATE_DEHYDR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEDLTRYRNEIDNIDKELIQLFEKRMNTVLEIARHKMKNNTTILQKDREEKVLSRAVDNL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHH DNKAYSQETVQFFNSIMEISRGLQKRLIDNDGEQKIEFGLDSSNKNFDLSNVNKYKSLKD CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHH ELNKKNILVGFPGKSGSFTEEALNKFFNKKISKKQFKEFEDVFIALKNKEINYGIIPIEN HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEEECC SSTGAISETYDLLRKYGFYIVGEECIKIDQNLIGIKDTKLEDIKEIYSHPQGIGQCSEFL CCCCCHHHHHHHHHHCCCEEECHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHH KQNSTWKLIPFNNTATSAELVRKLQDKTKAAIASKKAASIYGLEIISPCINDIANNYTRF HCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE VVISNQIHIEEESNKMSVVFSVEHEAGKLYKVLGYFAKNNINMTKIESRPMKNASWRYFF EEEECEEEEEECCCEEEEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEE YIDFECSIYNAKVYDLLELIEHNTAYFKFMGVYKNKTE EEEEEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCC >Mature Secondary Structure MEDLTRYRNEIDNIDKELIQLFEKRMNTVLEIARHKMKNNTTILQKDREEKVLSRAVDNL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHH DNKAYSQETVQFFNSIMEISRGLQKRLIDNDGEQKIEFGLDSSNKNFDLSNVNKYKSLKD CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHH ELNKKNILVGFPGKSGSFTEEALNKFFNKKISKKQFKEFEDVFIALKNKEINYGIIPIEN HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEEECC SSTGAISETYDLLRKYGFYIVGEECIKIDQNLIGIKDTKLEDIKEIYSHPQGIGQCSEFL CCCCCHHHHHHHHHHCCCEEECHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHH KQNSTWKLIPFNNTATSAELVRKLQDKTKAAIASKKAASIYGLEIISPCINDIANNYTRF HCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE VVISNQIHIEEESNKMSVVFSVEHEAGKLYKVLGYFAKNNINMTKIESRPMKNASWRYFF EEEECEEEEEECCCEEEEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEE YIDFECSIYNAKVYDLLELIEHNTAYFKFMGVYKNKTE EEEEEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10781569; 10993077 [H]