Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

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The map label for this gene is 126699418

Identifier: 126699418

GI number: 126699418

Start: 2093917

End: 2094294

Strand: Direct

Name: 126699418

Synonym: CD1810

Alternate gene names: NA

Gene position: 2093917-2094294 (Clockwise)

Preceding gene: 126699417

Following gene: 126699419

Centisome position: 48.81

GC content: 26.72

Gene sequence:

>378_bases
ATGACAATTTCAAAAATACCACAAGCAGAATTAAAAGTTATGAAGTTTATTTGGGAAAAAAATGATACAGTAACATCAAA
AGAAACTATTGAAGCTATGGAACGAAAATATGGTTGGAAACAAACAACTACATTGACACTTTTATCAAGACTTGTTAAAA
AACATTTTTTAAGTGCAGAAAAAATAGATAGATACACTCATTATACAATAGTTGTTGGACATAAGGAGTATTTAAGTGTT
GAGACAAAAGATTTTTTAAGCAATATACACGACAATTCTTTACAGAGTTTAATTTCAGCACTACATGATGATGAAGTTGT
TGATAAAGATATGTTGGATTTATTTGAAAGTCATTTTAAAAATTTAGAAGAAGAGTAA

Upstream 100 bases:

>100_bases
TGGTAAAAATTGGAAAATATTTTTATCGACAAAATCTTTGACTTAAAAACTATATTGCGATAGTATTAATTTAATAAAAG
TTTGAGAGGGGCGTAAGGTT

Downstream 100 bases:

>100_bases
TTATATCAGGATAGAACTCTAAGAATTTAATTAATCTATGGCTGAAAACCATAAATGGTATTATTTAATCAGCTACTCAC
TATTCATAAAGTAATATTAA

Product: regulatory protein

Products: NA

Alternate protein names: Transcriptional Repressor CopY Family; Penicillinase Repressor; Transcriptional Regulator; CopY Family Transcriptional Regulator; Beta-Lactamase Repressor; Phage Regulatory Protein; Transcriptional Regulator BlaI/MecI/CopY Family; Transcriptional Repressor

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MTISKIPQAELKVMKFIWEKNDTVTSKETIEAMERKYGWKQTTTLTLLSRLVKKHFLSAEKIDRYTHYTIVVGHKEYLSV
ETKDFLSNIHDNSLQSLISALHDDEVVDKDMLDLFESHFKNLEEE

Sequences:

>Translated_125_residues
MTISKIPQAELKVMKFIWEKNDTVTSKETIEAMERKYGWKQTTTLTLLSRLVKKHFLSAEKIDRYTHYTIVVGHKEYLSV
ETKDFLSNIHDNSLQSLISALHDDEVVDKDMLDLFESHFKNLEEE
>Mature_124_residues
TISKIPQAELKVMKFIWEKNDTVTSKETIEAMERKYGWKQTTTLTLLSRLVKKHFLSAEKIDRYTHYTIVVGHKEYLSVE
TKDFLSNIHDNSLQSLISALHDDEVVDKDMLDLFESHFKNLEEE

Specific function: Unknown

COG id: COG3682

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14706; Mature: 14575

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTISKIPQAELKVMKFIWEKNDTVTSKETIEAMERKYGWKQTTTLTLLSRLVKKHFLSAE
CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHH
KIDRYTHYTIVVGHKEYLSVETKDFLSNIHDNSLQSLISALHDDEVVDKDMLDLFESHFK
HHHHHHHEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
NLEEE
HCCCC
>Mature Secondary Structure 
TISKIPQAELKVMKFIWEKNDTVTSKETIEAMERKYGWKQTTTLTLLSRLVKKHFLSAE
CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHH
KIDRYTHYTIVVGHKEYLSVETKDFLSNIHDNSLQSLISALHDDEVVDKDMLDLFESHFK
HHHHHHHEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
NLEEE
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA