| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126699361
Identifier: 126699361
GI number: 126699361
Start: 2032847
End: 2033530
Strand: Direct
Name: 126699361
Synonym: CD1754
Alternate gene names: NA
Gene position: 2032847-2033530 (Clockwise)
Preceding gene: 126699360
Following gene: 126699362
Centisome position: 47.38
GC content: 23.54
Gene sequence:
>684_bases ATGAGGCTAAAAAATCTTATTTTAGGAGATATAAAGTTTCAATTTAAGTATGGTTTTTATTTTTTATATCTTTTTTTAAG TATTATATATATTTGTATTATCAATGTATTTCCAACTTTTATGAGAGAAAAAATAGCTATAATTATGATTTATTCTGACC CAGCAGCAATGGGATTGTTTTTTATGGGAGCTATTGTACTTCTTGAGAAAAGTCAAAGGGTTTTAAATTCCTTAGCTGTA TCTCCAGTAAAAGTATCTGAGTATATTTTATCAAAGGTAATTTCATTAGGAGTAATATCTAGTATTGTAGCTATGTTTAT TGCTATTACATTAAATTTAGATAATATTATAATATCAACTATAGGTACCTTTTTTTCTTCTATTATATTTTCTTTGCTTG GATTGATAATTGCAAGTAAAGCATCTAGTTTGAATCAGTTTATTGTTTTAAGTATTCCTATTGAGATTATATGCTTTATT CCACCAATACTGAATGTACTTCTTGACACAAAATCATATGCAAATTTGTACCCTTTTAATATATGTATTTCTCTTATTAG TGGAGATAAAAATTTTATAATGATTAATATTTTAATTTTAATATCAATTATAATAATAATTTATTTTATAACTTATTATT TTATTTGTAGCAGTTGGAAAAAGGTAGGTGGAGTAAAACTATGA
Upstream 100 bases:
>100_bases ATTTGAATATGCTTATTGAGAAAAATAAACTTTTATCAATACATAGTAGTGAACCAACATTAAATGATATTTTTATTGAG ATAACAGGGAGGAATTTACA
Downstream 100 bases:
>100_bases TAAAGATTATAAATGCGTTTAAACAAGAGTTTGAACAAATTAAGAGAGATGCTATGCTTTTTATAGTATGTGTTTCTCCA ATATTATGTGGAGTATTTAT
Product: ABC transporter permease
Products: NA
Alternate protein names: ABC-2 Type Transporter Superfamily; Abc Transporter Permease Protein
Number of amino acids: Translated: 227; Mature: 227
Protein sequence:
>227_residues MRLKNLILGDIKFQFKYGFYFLYLFLSIIYICIINVFPTFMREKIAIIMIYSDPAAMGLFFMGAIVLLEKSQRVLNSLAV SPVKVSEYILSKVISLGVISSIVAMFIAITLNLDNIIISTIGTFFSSIIFSLLGLIIASKASSLNQFIVLSIPIEIICFI PPILNVLLDTKSYANLYPFNICISLISGDKNFIMINILILISIIIIIYFITYYFICSSWKKVGGVKL
Sequences:
>Translated_227_residues MRLKNLILGDIKFQFKYGFYFLYLFLSIIYICIINVFPTFMREKIAIIMIYSDPAAMGLFFMGAIVLLEKSQRVLNSLAV SPVKVSEYILSKVISLGVISSIVAMFIAITLNLDNIIISTIGTFFSSIIFSLLGLIIASKASSLNQFIVLSIPIEIICFI PPILNVLLDTKSYANLYPFNICISLISGDKNFIMINILILISIIIIIYFITYYFICSSWKKVGGVKL >Mature_227_residues MRLKNLILGDIKFQFKYGFYFLYLFLSIIYICIINVFPTFMREKIAIIMIYSDPAAMGLFFMGAIVLLEKSQRVLNSLAV SPVKVSEYILSKVISLGVISSIVAMFIAITLNLDNIIISTIGTFFSSIIFSLLGLIIASKASSLNQFIVLSIPIEIICFI PPILNVLLDTKSYANLYPFNICISLISGDKNFIMINILILISIIIIIYFITYYFICSSWKKVGGVKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25540; Mature: 25540
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLKNLILGDIKFQFKYGFYFLYLFLSIIYICIINVFPTFMREKIAIIMIYSDPAAMGLF CCCCHHEEEHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHH FMGAIVLLEKSQRVLNSLAVSPVKVSEYILSKVISLGVISSIVAMFIAITLNLDNIIIST HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH IGTFFSSIIFSLLGLIIASKASSLNQFIVLSIPIEIICFIPPILNVLLDTKSYANLYPFN HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCCHHCCCCHHH ICISLISGDKNFIMINILILISIIIIIYFITYYFICSSWKKVGGVKL HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MRLKNLILGDIKFQFKYGFYFLYLFLSIIYICIINVFPTFMREKIAIIMIYSDPAAMGLF CCCCHHEEEHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHH FMGAIVLLEKSQRVLNSLAVSPVKVSEYILSKVISLGVISSIVAMFIAITLNLDNIIIST HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH IGTFFSSIIFSLLGLIIASKASSLNQFIVLSIPIEIICFIPPILNVLLDTKSYANLYPFN HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCCHHCCCCHHH ICISLISGDKNFIMINILILISIIIIIYFITYYFICSSWKKVGGVKL HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA